GgaEX0012468 @ galGal3
Exon Skipping
Gene
ENSGALG00000008532 | Q5ZLK9_CHICK
Description
NA
Coordinates
chr17:2307990-2309988:+
Coord C1 exon
chr17:2307990-2308092
Coord A exon
chr17:2309060-2309155
Coord C2 exon
chr17:2309846-2309988
Length
96 bp
Sequences
Splice sites
3' ss Seq
CCCCCTCTTAAAAATTCGAGGAA
3' ss Score
3.63
5' ss Seq
ATGGTGAGC
5' ss Score
8.27
Exon sequences
Seq C1 exon
GGACTTATCGATGATCTTGTGTGATCCCTTTGCCATTAACACCTTAGCCCTGAGTACCATAAGGCACCTGCAGGACCTAGTTGGGCAGGACACCTTACCCAGG
Seq A exon
GAAAGCCCAGATCTGCTGCTGCTCCTTAGGATGCTGTCTTTAGGACAGGGAGCCTGGGACATGATTGACAGTCAAGTCTTCAAGGAACCAAAAATG
Seq C2 exon
GAAGCTGAGTTGATCACGAAGTTCTTGCCTATGCTGATGTCCTTTGTGGTGGATGATCACACGTTCAATGTAGATCAGAAACTGCCCTCGGAGGAAAAGGGGCCGATTCCCTACCCCAGCACCATTCCTGAGGCTTTCACCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008532-'9-9,'9-6,10-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.021
Domain overlap (PFAM):
C1:
PF062098=COBRA1=FE(7.2=100)
A:
PF062098=COBRA1=FE(6.6=100)
C2:
PF062098=COBRA1=FE(10.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACCATAAGGCACCTGCAGGA
R:
AATGGTGCTGGGGTAGGGAAT
Band lengths:
175-271
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]