GgaEX0012468 @ galGal4
Exon Skipping
Gene
ENSGALG00000008532 | COBRA1
Description
negative elongation factor B [Source:RefSeq peptide;Acc:NP_001006202]
Coordinates
chr17:1902871-1904869:+
Coord C1 exon
chr17:1902871-1902973
Coord A exon
chr17:1903941-1904036
Coord C2 exon
chr17:1904727-1904869
Length
96 bp
Sequences
Splice sites
3' ss Seq
CCCCCTCTTAAAAATTCGAGGAA
3' ss Score
3.63
5' ss Seq
ATGGTGAGC
5' ss Score
8.27
Exon sequences
Seq C1 exon
GGACTTATCGATGATCTTGTGTGATCCCTTTGCCATTAACACCTTAGCCCTGAGTACCATAAGGCACCTGCAGGACCTAGTTGGGCAGGACACCTTACCCAGG
Seq A exon
GAAAGCCCAGATCTGCTGCTGCTCCTTAGGATGCTGTCTTTAGGACAGGGAGCCTGGGACATGATTGACAGTCAAGTCTTCAAGGAACCAAAAATG
Seq C2 exon
GAAGCTGAGTTGATCACGAAGTTCTTGCCTATGCTGATGTCCTTTGTGGTGGATGATCACACGTTCAATGTAGATCAGAAACTGCCCTCGGAGGAAAAGGGGCCGATTCCCTACCCCAGCACCATTCCTGAGGCTTTCACCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008532_MULTIEX1-2/2=1-C2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.042
Domain overlap (PFAM):
C1:
PF062098=COBRA1=FE(7.2=100)
A:
PF062098=COBRA1=FE(6.6=100)
C2:
PF062098=COBRA1=FE(10.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACCATAAGGCACCTGCAGGA
R:
AATGGTGCTGGGGTAGGGAAT
Band lengths:
175-271
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]