MmuEX1018380 @ mm10
Exon Skipping
Gene
ENSMUSG00000013465 | Nelfb
Description
negative elongation factor complex member B [Source:MGI Symbol;Acc:MGI:1931035]
Coordinates
chr2:25203348-25204300:-
Coord C1 exon
chr2:25204198-25204300
Coord A exon
chr2:25203887-25203982
Coord C2 exon
chr2:25203348-25203490
Length
96 bp
Sequences
Splice sites
3' ss Seq
ATGCCTCTGTCTTCTTTCAGGAT
3' ss Score
13.08
5' ss Seq
ATGGTATGA
5' ss Score
6.56
Exon sequences
Seq C1 exon
GGATTTGTCTATGATCCTGTGCGACCCCTTTGCCATCAACACACTGTCCCTGAGCACCATCAGGCACTTGCAGGAGCTGGTTAGCCAGGAGACACTGCCCAGG
Seq A exon
GATAGTCCCGACCTCCTCCTACTACTTAGGCTGCTGGCACTGGGCCAAGGTGCATGGGACTTAATAGATAGCCAGGTCTTCAAGGAGCCTAAGATG
Seq C2 exon
GAGGCAGAGCTCATCACCAAGTTCCTGCCGATGCTCATGTCCCTCGTGGTGGATGACTTCACTTTCAACGTAGATCAGAAGCTTCCAGCTGAGGAGAAAGCCTCAGTCACATACCCCAACACACTTCCTGAGAGTTTCACCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000013465-'11-19,'11-14,15-19
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF062098=COBRA1=FE(20.5=100)
A:
PF062098=COBRA1=FE(6.5=100)
C2:
PF062098=COBRA1=FE(15.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGCCATCAACACACTGTCCC
R:
AGGCTTTCTCCTCAGCTGGAA
Band lengths:
177-273
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types