RnoEX0059308 @ rn6
Exon Skipping
Gene
ENSRNOG00000009377 | Nelfb
Description
negative elongation factor complex member B [Source:RGD Symbol;Acc:1307832]
Coordinates
chr3:2423385-2424347:-
Coord C1 exon
chr3:2424245-2424347
Coord A exon
chr3:2423935-2424030
Coord C2 exon
chr3:2423385-2423527
Length
96 bp
Sequences
Splice sites
3' ss Seq
ATGCCTCTGTGTTCTTTCAGGAC
3' ss Score
12.53
5' ss Seq
ATGGTATGA
5' ss Score
6.56
Exon sequences
Seq C1 exon
GGACTTGTCTATGATCCTGTGTGACCCTTTTGCCATCAACACTCTGTCCCTGAGCACCATCAGGCACTTGCAGGAGCTGGTTAGCCAGGAGACCCTGCCCAGG
Seq A exon
GACAGTCCCGACCTCCTCCTCCTCCTTAGGCTGCTGGCACTGGGCCAAGGTGCATGGGACTTAATAGACAGCCAGGTCTTCAAGGAGCCCAAGATG
Seq C2 exon
GAGGCAGAGCTCATCACCAAGTTCCTGCCGATGCTCATGTCCTTCGTGGTGGATGACTACACTTTCAACGTAGATCAGAAGCTTCCAGCTGAGGAGAAAGCCCCAGTCACATATCCCAACACGCTTCCTGAAAGCTTCACCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009377_MULTIEX1-3/3=2-C2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.021
Domain overlap (PFAM):
C1:
PF062098=COBRA1=FE(7.2=100)
A:
PF062098=COBRA1=FE(6.5=100)
C2:
PF062098=COBRA1=FE(9.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAACACTCTGTCCCTGAGCA
R:
ATGTGACTGGGGCTTTCTCCT
Band lengths:
180-276
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]