BtaEX6047569 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000017851 | RXRA
Description
retinoid X receptor, alpha [Source:HGNC Symbol;Acc:HGNC:10477]
Coordinates
chr11:106009029-106012810:+
Coord C1 exon
chr11:106009029-106009161
Coord A exon
chr11:106011163-106011254
Coord C2 exon
chr11:106012705-106012810
Length
92 bp
Sequences
Splice sites
3' ss Seq
CCCTCCCCCCACGCACACAGGGT
3' ss Score
6.64
5' ss Seq
CCGGTACTG
5' ss Score
5.61
Exon sequences
Seq C1 exon
GCTGGAACGAGCTGCTCATCGCCTCCTTCTCGCACCGCTCCATCGCCGTGAAGGACGGCATCCTCCTGGCCACCGGGCTGCACGTACATCGCAACAGCGCCCACAGCGCAGGCGTGGGCGCCATTTTCGACAG
Seq A exon
GGTGCTGACGGAGCTGGTGTCCAAGATGCGGGACATGCAGATGGACAAGACGGAGCTGGGCTGCCTGCGCGCCATCGTCCTCTTCAACCCCG
Seq C2 exon
ACTCCAAGGGGCTCTCAAACCCAGCCGAGGTGGAGGCGCTTCGTGAGAAGGTCTATGCGTCCCTGGAGGCGTACTGCAAACACAAGTACCCCGAGCAGCCAGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017851-'9-9,'9-8,11-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0010425=Hormone_recep=FE(23.5=100)
A:
PF0010425=Hormone_recep=FE(16.6=100)
C2:
PF0010425=Hormone_recep=FE(18.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCTCGCACCGCTCCATC
R:
TCCAGGGACGCATAGACCTTC
Band lengths:
175-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]