MmuEX0040826 @ mm9
Exon Skipping
Gene
ENSMUSG00000015846 | Rxra
Description
retinoid X receptor alpha [Source:MGI Symbol;Acc:MGI:98214]
Coordinates
chr2:27609743-27613386:+
Coord C1 exon
chr2:27609743-27609875
Coord A exon
chr2:27611719-27611810
Coord C2 exon
chr2:27613281-27613386
Length
92 bp
Sequences
Splice sites
3' ss Seq
GCACCTGCCTTTTCCTGCAGGGT
3' ss Score
10.79
5' ss Seq
CTGGTACGG
5' ss Score
8.6
Exon sequences
Seq C1 exon
GCTGGAACGAGCTGCTGATCGCCTCCTTCTCCCACCGCTCCATAGCTGTGAAAGATGGGATTCTCCTGGCCACCGGCCTGCACGTACACCGGAACAGCGCTCACAGTGCTGGGGTGGGCGCCATCTTTGACAG
Seq A exon
GGTGCTAACAGAGCTGGTGTCTAAGATGCGTGACATGCAGATGGACAAGACGGAGCTGGGCTGCCTGCGAGCCATTGTCCTGTTCAACCCTG
Seq C2 exon
ACTCTAAGGGGCTCTCAAACCCTGCTGAGGTGGAGGCGTTGAGGGAGAAGGTGTATGCGTCACTAGAAGCGTACTGCAAACACAAGTACCCTGAGCAGCCGGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000015846-'15-13,'15-12,16-13
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0010425=Hormone_recep=FE(22.9=100)
A:
PF0010425=Hormone_recep=FE(16.1=100)
C2:
PF0010425=Hormone_recep=FE(18.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGATGGGATTCTCCTGGCCA
R:
GCTGCTCAGGGTACTTGTGTT
Band lengths:
181-273
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: