DreEX6071905 @ danRer10
Exon Skipping
Gene
ENSDARG00000078954 | rxrba
Description
retinoid x receptor, beta a [Source:ZFIN;Acc:ZDB-GENE-980526-436]
Coordinates
chr19:7331382-7333979:-
Coord C1 exon
chr19:7333938-7333979
Coord A exon
chr19:7333380-7333471
Coord C2 exon
chr19:7331382-7331487
Length
92 bp
Sequences
Splice sites
3' ss Seq
CCCTGTTTTAATGGCATCAGGGT
3' ss Score
4.25
5' ss Seq
CAGGTCAGA
5' ss Score
7.41
Exon sequences
Seq C1 exon
GGAGAGTGCGCACAATGCAGAGGTTGGGGCCATATTCGACAG
Seq A exon
GGTGCTGACCGAGCTGGTGAGCAAAATGAGGGACATGCAGATGGATAAAACGGAGCTGGGATGCCTCAGAGCCATCATCCTATTCAACCCAG
Seq C2 exon
ATGCAAAGGGATTGTCAAGCCCAAGTGAAGTGGAGTTACTAAGAGAGAAGGTCTATGCATCGCTGGAGGCCTATTGTAAACAGAGATATCCTGACCAGCAGGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000078954-'18-24,'18-22,19-24=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0010425=Hormone_recep=FE(7.1=100)
A:
PF0010425=Hormone_recep=FE(15.7=100)
C2:
PF0010425=Hormone_recep=FE(17.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGAGTGCGCACAATGCAG
R:
CTGCTGGTCAGGATATCTCTGT
Band lengths:
143-235
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]