MmuEX0040829 @ mm10
Exon Skipping
Gene
ENSMUSG00000039656 | Rxrb
Description
retinoid X receptor beta [Source:MGI Symbol;Acc:MGI:98215]
Coordinates
chr17:34036625-34037272:+
Coord C1 exon
chr17:34036625-34036757
Coord A exon
chr17:34036873-34036964
Coord C2 exon
chr17:34037167-34037272
Length
92 bp
Sequences
Splice sites
3' ss Seq
ACCTGCAGGTCCCTCTCCAGGGT
3' ss Score
5.34
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
GCTGGAACGAGCTCCTCATTGCGTCCTTCTCCCATCGGTCCATTGATGTCCGAGATGGCATCCTCCTGGCCACGGGTCTTCATGTGCACAGAAACTCAGCCCATTCCGCAGGCGTGGGAGCCATCTTTGATCG
Seq A exon
GGTGCTGACAGAGCTAGTGTCCAAAATGCGTGACATGAGGATGGACAAGACAGAGCTTGGCTGCCTGCGGGCAATCATACTGTTTAATCCAG
Seq C2 exon
ACGCCAAGGGCCTCTCCAACCCTGGAGAGGTGGAGATCCTTCGGGAGAAGGTGTACGCCTCACTGGAGACCTATTGCAAGCAGAAGTACCCTGAGCAGCAGGGCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039656-'16-17,'16-16,17-17
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0010425=Hormone_recep=FE(23.5=100)
A:
PF0010425=Hormone_recep=FE(16.9=100)
C2:
PF0010425=Hormone_recep=FE(18.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGGTCCATTGATGTCCGAGA
R:
TAGGTCTCCAGTGAGGCGTAC
Band lengths:
172-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types