BtaEX6096859 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000000602 | RXRB
Description
Bos taurus retinoid X receptor, beta (RXRB), mRNA. [Source:RefSeq mRNA;Acc:NM_001083640]
Coordinates
chr23:7321512-7322275:-
Coord C1 exon
chr23:7322143-7322275
Coord A exon
chr23:7321936-7322027
Coord C2 exon
chr23:7321512-7321617
Length
92 bp
Sequences
Splice sites
3' ss Seq
ACCTGCAGGTCCCTCTCCAGGGT
3' ss Score
5.34
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
GGTGGAACGAGCTGCTCATCGCCTCCTTCTCTCACCGATCCATCGATGTCCGAGACGGCATCCTCCTCGCCACAGGTCTCCACGTGCACCGCAACTCAGCCCATTCCGCAGGCGTGGGAGCCATCTTCGATAG
Seq A exon
GGTGCTGACAGAGCTAGTGTCCAAAATGCGGGACATGAGGATGGACAAGACAGAACTTGGCTGCCTGCGGGCAATCATTCTGTTCAATCCAG
Seq C2 exon
ATGCCAAGGGCCTCTCCAACCCCAGCGAGGTTGAGGTCCTGCGAGAGAAAGTATATGCATCCCTGGAGACCTACTGCAAACAGAAGTACCCTGAGCAACAGGGCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000602-'10-12,'10-11,11-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0010425=Hormone_recep=FE(24.0=100)
A:
PF0010425=Hormone_recep=FE(16.9=100)
C2:
PF0010425=Hormone_recep=FE(19.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCATCGCCTCCTTCTCTCACC
R:
ACTTTCTCTCGCAGGACCTCA
Band lengths:
170-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]