RnoEX0077635 @ rn6
Exon Skipping
Gene
ENSRNOG00000000464 | Rxrb
Description
retinoid X receptor beta [Source:RGD Symbol;Acc:3611]
Coordinates
chr20:3827347-3827966:+
Coord C1 exon
chr20:3827347-3827479
Coord A exon
chr20:3827595-3827686
Coord C2 exon
chr20:3827861-3827966
Length
92 bp
Sequences
Splice sites
3' ss Seq
ACCTGCAGGTCCCTCTCCAGGGT
3' ss Score
5.34
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
GCTGGAATGAGCTCCTCATTGCGTCCTTCTCCCATCGGTCCATCGATGTCCGAGATGGCATCCTCCTGGCCACGGGTCTTCATGTGCACAGAAACTCAGCCCATTCTGCAGGCGTGGGAGCCATCTTTGATCG
Seq A exon
GGTGCTGACAGAGCTAGTGTCCAAAATGCGTGACATGAGGATGGACAAGACGGAGCTTGGCTGCCTGCGGGCAATCATACTGTTTAACCCAG
Seq C2 exon
ACGCCAAGGGCCTCTCCAACCCTGGAGAGGTGGAGATCCTTCGGGAGAAGGTGTATGCCTCACTGGAGACCTACTGCAAGCAGAAGTATCCTGAGCAGCAGGGCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000464-'14-20,'14-19,16-20
Average complexity
S
Mappability confidence:
86%=80=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.059 C2=0.021
Domain overlap (PFAM):
C1:
PF0010425=Hormone_recep=FE(24.0=100)
A:
PF0010425=Hormone_recep=FE(16.9=100)
C2:
PF0010425=Hormone_recep=PD(25.0=94.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTTCTCCCATCGGTCCATC
R:
AGGCATACACCTTCTCCCGAA
Band lengths:
170-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]