MmuEX0040829 @ mm9
Exon Skipping
Gene
ENSMUSG00000039656 | Rxrb
Description
retinoid X receptor beta [Source:MGI Symbol;Acc:MGI:98215]
Coordinates
chr17:34173570-34174217:+
Coord C1 exon
chr17:34173570-34173702
Coord A exon
chr17:34173806-34173909
Coord C2 exon
chr17:34174112-34174217
Length
104 bp
Sequences
Splice sites
3' ss Seq
GACCTTTGAGTGACCTGCAGGTC
3' ss Score
3.43
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
GCTGGAACGAGCTCCTCATTGCGTCCTTCTCCCATCGGTCCATTGATGTCCGAGATGGCATCCTCCTGGCCACGGGTCTTCATGTGCACAGAAACTCAGCCCATTCCGCAGGCGTGGGAGCCATCTTTGATCG
Seq A exon
GTCCCTCTCCAGGGTGCTGACAGAGCTAGTGTCCAAAATGCGTGACATGAGGATGGACAAGACAGAGCTTGGCTGCCTGCGGGCAATCATACTGTTTAATCCAG
Seq C2 exon
ACGCCAAGGGCCTCTCCAACCCTGGAGAGGTGGAGATCCTTCGGGAGAAGGTGTACGCCTCACTGGAGACCTATTGCAAGCAGAAGTACCCTGAGCAGCAGGGCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039656-'10-12,'10-10,11-12
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0010425=Hormone_recep=FE(23.5=100)
A:
PF0010425=Hormone_recep=FE(18.7=100)
C2:
PF0010425=Hormone_recep=FE(18.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGGAACGAGCTCCTCATTG
R:
CTGCTGCTCAGGGTACTTCTG
Band lengths:
234-338
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: