GgaEX6015366 @ galGal4
Exon Skipping
Gene
ENSGALG00000002626 | RXRA
Description
retinoid X receptor, alpha [Source:HGNC Symbol;Acc:HGNC:10477]
Coordinates
chr17:7348013-7350608:+
Coord C1 exon
chr17:7348013-7348145
Coord A exon
chr17:7349552-7349643
Coord C2 exon
chr17:7350503-7350608
Length
92 bp
Sequences
Splice sites
3' ss Seq
GCTTCTCGTGTCCTTTGCAGAGT
3' ss Score
10.12
5' ss Seq
CCGGTACGC
5' ss Score
8.81
Exon sequences
Seq C1 exon
GGTGGAATGAGCTCCTCATCGCCTCCTTCTCCCACCGCTCCATAGCTGTGAAGGATGGGATCCTGCTGGCCACGGGGCTGCACGTGCACCGCAACAGCGCGCACAGCGCCGGTGTCGGGGCCATCTTTGACAG
Seq A exon
AGTACTGACAGAACTCGTGTCGAAGATGCGAGACATGCAGATGGACAAGACAGAGCTGGGCTGCCTGCGAGCCATCGTCCTCTTCAACCCCG
Seq C2 exon
ACTCAAAAGGTCTCTCCAACCCGGCTGAAGTGGAGGCATTACGGGAGAAGGTGTACGCATCGCTGGAGGCGTATTGCAAGCACAAATACCCCGACCAGCCCGGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002626-'9-9,'9-8,11-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0010425=Hormone_recep=FE(23.2=100)
A:
PF0010425=Hormone_recep=FE(16.3=100)
C2:
PF0010425=Hormone_recep=FE(18.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCTCATCGCCTCCTTCTCC
R:
ATGCGTACACCTTCTCCCGTA
Band lengths:
182-274
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]