DreEX6083940 @ danRer10
Exon Skipping
Gene
ENSDARG00000057737 | rxraa
Description
retinoid X receptor, alpha a [Source:ZFIN;Acc:ZDB-GENE-070314-2]
Coordinates
chr21:17898855-17905330:+
Coord C1 exon
chr21:17898855-17898987
Coord A exon
chr21:17902764-17902855
Coord C2 exon
chr21:17905225-17905330
Length
92 bp
Sequences
Splice sites
3' ss Seq
GTGTTTTCTCTTATATTTAGAGT
3' ss Score
9
5' ss Seq
CAGGTAACA
5' ss Score
8.88
Exon sequences
Seq C1 exon
GATGGAATGAGCTCCTCATTGCGTCATTTTCGCACCGATCCATAGCAGTGAAAGATGGAATACTGTTGGCCACAGGATTACATGTGCACCGAAACAGCGCCCACAGTGCCGGAGTAGGAGCCATATTTGACAG
Seq A exon
AGTGCTGACGGAGTTGGTATCAAAGATGAGAGACATGCAGATGGATAAAACAGAGCTTGGATGTCTTCGAGCCATTGTACTATTTAACCCAG
Seq C2 exon
ACTCCAAAGGCCTGTCAAACCCTGGTGAAGTGGAAGCACTGAGAGAGAAGGTCTATGCCTCTCTGGAAGCTTACTGCAAACATAAGTACCCTGAACAACCTGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000057737-'13-17,'13-16,15-17=AN
Average complexity
A_S
Mappability confidence:
86%=80=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0010425=Hormone_recep=FE(22.6=100)
A:
PF0010425=Hormone_recep=FE(15.9=100)
C2:
PF0010425=Hormone_recep=FE(17.9=100)
Main Skipping Isoform:
ENSDART00000124173fB5365
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTCGCACCGATCCATAGCAG
R:
GCAGTAAGCTTCCAGAGAGGC
Band lengths:
183-275
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]