GgaEX6015366 @ galGal3
Exon Skipping
Gene
ENSGALG00000002626 | F1NH64_CHICK
Description
NA
Coordinates
chr17:8029267-8031862:+
Coord C1 exon
chr17:8029267-8029399
Coord A exon
chr17:8030806-8030897
Coord C2 exon
chr17:8031757-8031862
Length
92 bp
Sequences
Splice sites
3' ss Seq
GCTTCTCGTGTCCTTTGCAGAGT
3' ss Score
10.12
5' ss Seq
CCGGTACGC
5' ss Score
8.81
Exon sequences
Seq C1 exon
GGTGGAATGAGCTCCTCATCGCCTCCTTCTCCCACCGCTCCATAGCTGTGAAGGATGGGATCCTGCTGGCCACGGGGCTGCACGTGCACCGCAACAGCGCGCACAGCGCCGGTGTCGGGGCCATCTTTGACAG
Seq A exon
AGTACTGACAGAACTCGTGTCGAAGATGCGAGACATGCAGATGGACAAGACAGAGCTGGGCTGCCTGCGAGCCATCGTCCTCTTCAACCCCG
Seq C2 exon
ACTCAAAAGGTCTCTCCAACCCGGCTGAAGTGGAGGCATTACGGGAGAAGGTGTACGCATCGCTGGAGGCGTATTGCAAGCACAAATACCCCGACCAGCCCGGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002626-'6-8,'6-7,8-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0010425=Hormone_recep=FE(23.2=100)
A:
PF0010425=Hormone_recep=FE(16.3=100)
C2:
PF0010425=Hormone_recep=FE(18.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCTCATCGCCTCCTTCTCC
R:
ATGCGTACACCTTCTCCCGTA
Band lengths:
182-274
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]