RnoEX6016109 @ rn6
Exon Skipping
Gene
ENSRNOG00000009446 | Rxra
Description
retinoid X receptor alpha [Source:RGD Symbol;Acc:3610]
Coordinates
chr3:6289974-6293532:+
Coord C1 exon
chr3:6289974-6290106
Coord A exon
chr3:6291967-6292058
Coord C2 exon
chr3:6293427-6293532
Length
92 bp
Sequences
Splice sites
3' ss Seq
GGCACTTGCTTTCCCCGCAGGGT
3' ss Score
10.49
5' ss Seq
CTGGTACGG
5' ss Score
8.6
Exon sequences
Seq C1 exon
GCTGGAACGAGCTGCTGATTGCCTCCTTCTCCCACCGCTCCATAGCTGTGAAAGACGGCATCCTCCTGGCCACCGGCCTGCACGTACACAGGAACAGCGCTCACAGTGCTGGGGTGGGCGCCATCTTTGACAG
Seq A exon
GGTGCTAACGGAGCTGGTGTCGAAGATGCGTGACATGCAGATGGACAAGACGGAGCTGGGCTGCTTGCGCGCCATTGTCCTCTTCAACCCTG
Seq C2 exon
ACTCTAAGGGGCTCTCAAACCCTGCTGAGGTGGAGGCGCTGAGGGAGAAGGTGTATGCATCACTAGAAGCGTACTGCAAACACAAGTACCCTGAGCAGCCGGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009446-'36-9,'36-8,38-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0010425=Hormone_recep=FE(22.9=100)
A:
PF0010425=Hormone_recep=FE(16.1=100)
C2:
PF0010425=Hormone_recep=FE(18.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCTGATTGCCTCCTTCTCC
R:
GCATACACCTTCTCCCTCAGC
Band lengths:
180-272
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]