BtaEX6047612 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000047254 | ABCA2
Description
ATP-binding cassette, sub-family A (ABC1), member 2 [Source:HGNC Symbol;Acc:HGNC:32]
Coordinates
chr11:106216219-106216961:+
Coord C1 exon
chr11:106216219-106216399
Coord A exon
chr11:106216474-106216686
Coord C2 exon
chr11:106216765-106216961
Length
213 bp
Sequences
Splice sites
3' ss Seq
GACCTCACCTGTCCGCCCAGGTC
3' ss Score
6.67
5' ss Seq
CAAGTGGGT
5' ss Score
4.82
Exon sequences
Seq C1 exon
AGGAGACACGGGGCATGGAAGAGGAACCCACCCACCTGCCGCTGGTAGTCTGCGTGGACAAGCTCACCAAGGTCTATAAGAACGACAAGAAGCTGGCTTTGAACAAGCTGAGCCTCAACCTCTATGAGAACCAGGTCGTGTCCTTCCTGGGCCACAACGGGGCTGGCAAGACCACCACCAT
Seq A exon
GTCTATCCTCACCGGCCTGTTCCCACCTACATCGGGCTCGGCCACCATCTACGGGCATGACATCCGCACGGAGATGGACGAGATCCGCAAGAACCTGGGCATGTGTCCCCAGCACAATGTGCTCTTCGACCGGCTCACGGTGGAGGAGCACCTCTGGTTCTACTCGAGGCTCAAGAGCATGGCCCAGGAGGAGATCCGCAAGGAGATGGACAA
Seq C2 exon
GATGATCGAGGACCTGGAGCTCTCCAACAAACGGCACTCGCTGGTGCAGACGCTGTCCGGCGGCATGAAGCGCAAGCTCTCGGTGGCCATTGCCTTCGTGGGCGGCTCCCGGGCCATCATCCTGGATGAGCCCACGGCCGGCGTGGACCCCTACGCGCGCCGCGCCATCTGGGACCTGATCCTGAAGTACAAGCCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000047254-'28-30,'28-29,30-30=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.120 A=0.019 C2=0.000
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=PU(18.6=44.3)
A:
PF0000522=ABC_tran=FE(49.0=100)
C2:
PF0000522=ABC_tran=PD(31.7=68.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATGGAAGAGGAACCCACCCA
R:
GTGGGCTCATCCAGGATGATG
Band lengths:
303-516
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]