DreEX6010778 @ danRer10
Exon Skipping
Gene
ENSDARG00000013500 | abca2
Description
ATP-binding cassette, sub-family A (ABC1), member 2 [Source:ZFIN;Acc:ZDB-GENE-050517-1]
Coordinates
chr5:24619281-24622496:-
Coord C1 exon
chr5:24622316-24622496
Coord A exon
chr5:24621926-24622138
Coord C2 exon
chr5:24619281-24619477
Length
213 bp
Sequences
Splice sites
3' ss Seq
ATCCAGTGAATATCCCACAGGTC
3' ss Score
4.86
5' ss Seq
CAAGTGGGT
5' ss Score
4.82
Exon sequences
Seq C1 exon
AGGAAACCCGTGGAATTGAAGAAGAGCCCAATCATTTGCCGCTGGTGGTGTGCATCGACAAACTGACCAAAGTCTACAAGACGGGCAGCAAACTGGCTCTAAACAAGCTGAGCCTGAACCTGCATGAGAACCAGGTTGTCTCTTTCTTGGGACACAATGGGGCTGGCAAGACCACCACTAT
Seq A exon
GTCCATTCTCACGGGACTCTTTCCACCCACCTCTGGCTCTGCCACCATATACGGCCATGACATCCGCACAGAGATGGAGCGCATCAGGCAGAACTTGGGCATGTGTCCCCAGCACAACGTCCTGTTTGATAAGCTCAGTGTGGAGGAACATCTGTGGTTCTACTCACGGCTGAAAGGCATGGCAGAGGAAGATATTCGCAAGGAGATGGACAA
Seq C2 exon
GATGATAGAGGATCTCGAATTATCTAATAAACGTCACAGTCTGGTTCAAACCCTGTCAGGAGGGATGAAAAGGAAGCTGTCAGTGGCCATTGCTTTTGTAGGTGGGTCTCGGGCAGTGATTTTGGATGAACCAACAGCAGGAGTAGACCCATATGCCCGTCGAGCGATCTGGGACCTCATCCTGAAATATAAGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000013500-'25-29,'25-28,26-29=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.115 A=0.042 C2=0.000
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=PU(18.6=44.3)
A:
PF0000522=ABC_tran=FE(49.0=100)
C2:
PF0000522=ABC_tran=PD(31.7=68.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGTGGTGTGCATCGACAAA
R:
ACGGGCATATGGGTCTACTCC
Band lengths:
300-513
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]