RnoEX6015851 @ rn6
Exon Skipping
Gene
ENSRNOG00000014268 | Abca2
Description
ATP binding cassette subfamily A member 2 [Source:RGD Symbol;Acc:620238]
Coordinates
chr3:2659473-2661050:+
Coord C1 exon
chr3:2659473-2659653
Coord A exon
chr3:2659727-2659939
Coord C2 exon
chr3:2660854-2661050
Length
213 bp
Sequences
Splice sites
3' ss Seq
CTCCACTTTCCCCACTCCAGGTC
3' ss Score
9.03
5' ss Seq
CAAGTGAGT
5' ss Score
9.1
Exon sequences
Seq C1 exon
AGGAGACTCGCGGTATGGAGGAGGAGCCCACCCACCTGCCTTTGGTCGTCTGCGTGGACAAGCTCACCAAGGTCTATAAAAATGACAAGAAGCTGGCCTTAAACAAACTGAGCCTCAATCTCTACGAGAACCAGGTGGTCTCTTTCCTAGGCCATAACGGGGCTGGCAAGACCACTACCAT
Seq A exon
GTCTATCCTGACTGGACTGTTCCCACCCACGTCGGGCTCAGCCACTATCTATGGCCACGACATCCGCACAGAGATGGATGAGATCCGTAAGAACCTGGGCATGTGCCCACAGCACAACGTGCTCTTTGACCAGCTCACTGTGGAGGAACACCTCTGGTTCTACTCACGCCTCAAAAGCATGGCACAAGAGGAGATCCGCAAAGAGATGGACAA
Seq C2 exon
GATGATCGAGGACCTGGAGCTCTCCAACAAGCGCCACTCGCTGGTACAGACGCTGTCTGGAGGCATGAAGCGCAAGCTTTCAGTAGCCATTGCCTTCGTGGGTGGCTCTAGAGCCATTATCTTAGATGAGCCCACAGCTGGCGTGGACCCCTATGCTCGACGTGCCATCTGGGACCTCATTCTGAAGTACAAGCCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014268-'33-39,'33-37,34-39=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.082 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=PU(18.6=44.3)
A:
PF0000522=ABC_tran=FE(49.0=100)
C2:
PF0000522=ABC_tran=PD(31.7=68.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGACAAGCTCACCAAGGTC
R:
GATGGCACGTCGAGCATAGG
Band lengths:
297-510
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]