GgaEX6014664 @ galGal3
Exon Skipping
Gene
ENSGALG00000001226 | E1C8X7_CHICK
Description
NA
Coordinates
chr17:814726-815952:-
Coord C1 exon
chr17:815772-815952
Coord A exon
chr17:815285-815497
Coord C2 exon
chr17:814726-815020
Length
213 bp
Sequences
Splice sites
3' ss Seq
TCCTTTCTCCATCCGTCCAGGTC
3' ss Score
9.5
5' ss Seq
CAAGTAGGC
5' ss Score
5.3
Exon sequences
Seq C1 exon
AGGAGACACGGGGCATCGAGGAGGAGCCGACCCACCTCCCCTTGGTTGTCTGCATTGACAAGCTCACCAAGGTCTACAAAACTGACAAGAAGCTGGCACTGAACAAGCTGAGCCTCAACCTCTATGAGAACCAGGTGGTGTCCTTCCTGGGGCACAACGGTGCAGGCAAAACCACCACCAT
Seq A exon
GTCCATCCTGACTGGCTTATTCCCACCAACCTCGGGCTCCGCTACCATCTATGGTCACGATATTCGGACAGAGATGGATGAGATCCGGAAAAACTTGGGCATGTGTCCCCAGCACAACGTGCTCTTTGACAGACTGACGGTGGAAGAGCACCTCTGGTTCTACTCACAGCTCAAGAGCATGGCAGAGGAGGAGATCCGCAAGGAGATGGACAA
Seq C2 exon
GATGATTGAGGACCTGGAGCTCTCCAACAAACGCCATTCCTTAGTGCAGACCCTCTCAGGGGGCATGAAAAGAAAACTGTCAGTGGCCATTGCCTTTGTGGGTGGGTCACGGGCTGTGATCCTGGATGAGCCCACGGCTGGAGTTGACCCCTATGCACGCAGAGCCATCTGGGACCTCATCCTCAAGTACAAGCCAGGTGAGCAGGGAAGGGCAGAGCCATGCATGGGGCAAAAAACTGAGCCTAGGCTTAAGAGTGGAGGGAAAACCCCTTGCTGTCCTCCCAGGAGGGACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001226-'22-28,'22-27,23-28=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.066 A=0.010 C2=0.300
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=PU(18.6=44.3)
A:
PF0000522=ABC_tran=FE(49.0=100)
C2:
PF0000522=ABC_tran=PD(31.7=46.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGACAAGAAGCTGGCACTG
R:
TGCTCACCTGGCTTGTACTTG
Band lengths:
305-518
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]