MmuEX6099525 @ mm9
Exon Skipping
Gene
ENSMUSG00000026944 | Abca2
Description
ATP-binding cassette, sub-family A (ABC1), member 2 [Source:MGI Symbol;Acc:MGI:99606]
Coordinates
chr2:25294587-25296241:+
Coord C1 exon
chr2:25294587-25294767
Coord A exon
chr2:25294847-25295059
Coord C2 exon
chr2:25296045-25296241
Length
213 bp
Sequences
Splice sites
3' ss Seq
CCCCGCTTACCCCACTCCAGGTC
3' ss Score
7.98
5' ss Seq
CAAGTGAGC
5' ss Score
6.39
Exon sequences
Seq C1 exon
AGGAGACCCGCGGCATGGAGGAGGAGCCCACCCACCTGCCCTTGGTCGTCTGTGTGGACAAGCTCACCAAGGTCTATAAGAATGACAAGAAGATGGCCTTAAACAAACTGAGCCTCAATCTGTATGAGAATCAGGTGGTCTCTTTCCTAGGCCACAACGGGGCCGGCAAGACCACGACCAT
Seq A exon
GTCGATCCTGACTGGACTGTTCCCACCCACGTCGGGCTCAGCCACTATCTATGGGCACGACATCCGCACCGAGATGGATGAGATCCGCAAGAACCTGGGCATGTGCCCACAGCACAACGTGCTCTTTGACCGGCTCACGGTGGAGGAGCACCTCTGGTTCTACTCACGCCTCAAAAGCATGGCACAGGAGGAGATCCGCAAAGAGACGGACAA
Seq C2 exon
GATGATTGAGGACCTGGAACTCTCTAACAAGCGGCACTCACTGGTGCAGACGTTGTCTGGAGGCATGAAGCGCAAGCTTTCGGTAGCCATTGCCTTTGTGGGTGGCTCTAGAGCCATTATCTTAGACGAGCCCACGGCTGGCGTGGACCCCTATGCTCGCCGTGCCATCTGGGACCTCATTCTGAAGTACAAGCCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026944-'26-29,'26-28,27-29=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.090 A=0.007 C2=0.000
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=PU(18.6=44.3)
A:
PF0000522=ABC_tran=FE(49.0=100)
C2:
PF0000522=ABC_tran=PD(31.7=68.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGACAAGCTCACCAAGGTCT
R:
AATGAGGTCCCAGATGGCACG
Band lengths:
308-521
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: