GgaEX6014664 @ galGal4
Exon Skipping
Gene
ENSGALG00000001226 | ABCA2
Description
ATP-binding cassette, sub-family A (ABC1), member 2 [Source:HGNC Symbol;Acc:HGNC:32]
Coordinates
chr17:433379-434507:-
Coord C1 exon
chr17:434327-434507
Coord A exon
chr17:433840-434052
Coord C2 exon
chr17:433379-433575
Length
213 bp
Sequences
Splice sites
3' ss Seq
TCCTTTCTCCATCCGTCCAGGTC
3' ss Score
9.5
5' ss Seq
CAAGTAGGC
5' ss Score
5.3
Exon sequences
Seq C1 exon
AGGAGACACGGGGCATCGAGGAGGAGCCGACCCACCTCCCCTTGGTTGTCTGCATTGACAAGCTCACCAAGGTCTACAAAACTGACAAGAAGCTGGCACTGAACAAGCTGAGCCTCAACCTCTATGAGAACCAGGTGGTGTCCTTCCTGGGGCACAACGGTGCAGGCAAAACCACCACCAT
Seq A exon
GTCCATCCTGACTGGCTTATTCCCACCAACCTCGGGCTCCGCTACCATCTATGGTCACGATATTCGGACAGAGATGGATGAGATCCGGAAAAACTTGGGCATGTGTCCCCAGCACAACGTGCTCTTTGACAGACTGACGGTGGAAGAGCACCTCTGGTTCTACTCACAGCTCAAGAGCATGGCAGAGGAGGAGATCCGCAAGGAGATGGACAA
Seq C2 exon
GATGATTGAGGACCTGGAGCTCTCCAACAAACGCCATTCCTTAGTGCAGACCCTCTCAGGGGGCATGAAAAGAAAACTGTCAGTGGCCATTGCCTTTGTGGGTGGGTCACGGGCTGTGATCCTGGATGAGCCCACGGCTGGAGTTGACCCCTATGCACGCAGAGCCATCTGGGACCTCATCCTCAAGTACAAGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001226-'31-33,'31-32,32-33=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.066 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=PU(18.6=44.3)
A:
PF0000522=ABC_tran=FE(49.0=100)
C2:
PF0000522=ABC_tran=PD(31.7=68.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCCTTGGTTGTCTGCATTGA
R:
GTGCATAGGGGTCAACTCCAG
Band lengths:
302-515
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]