BtaEX6047680 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021550 | MAMDC4
Description
Bos taurus MAM domain containing 4 (MAMDC4), mRNA. [Source:RefSeq mRNA;Acc:NM_001143873]
Coordinates
chr11:106326462-106327097:-
Coord C1 exon
chr11:106326951-106327097
Coord A exon
chr11:106326674-106326808
Coord C2 exon
chr11:106326462-106326589
Length
135 bp
Sequences
Splice sites
3' ss Seq
ACCCGCTCTCTCATCCCCAGGCC
3' ss Score
11.53
5' ss Seq
TCTGTGAGT
5' ss Score
7
Exon sequences
Seq C1 exon
CTTCCTGTGACTTCGAGGCTGGTCTTTGTGGCTGGAACCATGTGCCCCGGCCCGGCCTGGGCGGGTACAGCTGGGACTGGAGCAGCGGAGCCTCGCCCTCCCGCTACCCGCAGCCCCCCGTGGACCACACCCTGGGCACAGAGGCAG
Seq A exon
GCCACTTCGCCCTCTTCGAGACCAGCGTGCTGGGCCCAGGGGGCCGAGCGGCCGGGCTCATCAGCCAGCCTCTGCCCCCCACCACGGCCTCTTGTCTGCGCTTCTGGTACCACATGGGCTTCCCCGAGCACTTCT
Seq C2 exon
ACCAGGGCGAGCTGAGGGTCCTCCTGAGCAGCGCGCAGGGGCAGCTGGCCGTGTGGGGCGCGGGTGGGCGCCACAGACACCAGTGGCTGGAGGGCCAGGTGGACGTGGCCAGTGCCAGAGAGTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021550-'26-24,'26-23,27-24=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.180 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0062918=MAM=PU(28.3=94.0)
A:
PF0062918=MAM=FE(27.1=100)
C2:
PF0062918=MAM=FE(25.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTCTTTGTGGCTGGAACCAT
R:
CTGGAACTCTCTGGCACTGG
Band lengths:
255-390
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]