RnoEX6015888 @ rn6
Exon Skipping
Gene
ENSRNOG00000016584 | Mamdc4
Description
MAM domain containing 4 [Source:RGD Symbol;Acc:708583]
Coordinates
chr3:2787617-2788226:-
Coord C1 exon
chr3:2788080-2788226
Coord A exon
chr3:2787840-2787974
Coord C2 exon
chr3:2787617-2787744
Length
135 bp
Sequences
Splice sites
3' ss Seq
CCCCACCCTTTCATCTCCAGGCC
3' ss Score
10.65
5' ss Seq
TCTGTGAGT
5' ss Score
7
Exon sequences
Seq C1 exon
GGTCCTGTGACTTTGAATCTGGCCTGTGTGGGTGGAGCCACCTGCCTTGGCCTGGTCTGGGTGGGTACAGCTGGGACTGGAGCAGTGGAGCCACTCCATCCCGGTACCCCCGGCCTTCAGTGGACCACACTGTGGGCACAGAAGCAG
Seq A exon
GCCACTTCGCTTTCTTTGAAACCAGCGTGCTAGGTCCTGGGGGCCAGGCAGCCTGGCTGCGCAGTGAGCCACTGCCAGCAACTGCAGTCTCCTGCCTCCACTTCTGGTACTACATGGGCTTTCCTGCGCATTTCT
Seq C2 exon
ACAAGGGTGAGTTGAGAGTGCTCCTGAGCAGTACCCAAGGACAGCTAGCTGTGTGGCACCGGGGTGGGCACTTGCGGGACCAGTGGCTACAAGTCCAGATTGAAGTGTCCAGCTCTGAGGAGTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016584-'24-26,'24-25,26-26=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.080 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0062918=MAM=PU(28.3=94.0)
A:
PF0062918=MAM=FE(27.1=100)
C2:
PF0062918=MAM=FE(25.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTGAATCTGGCCTGTGTGGG
R:
TCCTCAGAGCTGGACACTTCA
Band lengths:
257-392
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]