GgaEX0013206 @ galGal4
Exon Skipping
Gene
ENSGALG00000008995 | MAMDC4
Description
MAM domain containing 4 [Source:HGNC Symbol;Acc:HGNC:24083]
Coordinates
chr17:556096-557088:-
Coord C1 exon
chr17:556942-557088
Coord A exon
chr17:556453-556587
Coord C2 exon
chr17:556096-556223
Length
135 bp
Sequences
Splice sites
3' ss Seq
ATGCCACCCTGCCCCTCCAGGTC
3' ss Score
10.23
5' ss Seq
TCAGTGAGA
5' ss Score
2.69
Exon sequences
Seq C1 exon
CATCCTGTGACTTTGAGTGGGACACGTGCGGCTGGAGCAGCCCCTCAGATGAGCGCCTGCACGGCTTCACCTGGGGCTGGAAGAGTGGTGTCCCCCTGGCCAAGTACCCCGGCCCTGAACAGGACCACACCCTGGGCACAGAGGATG
Seq A exon
GTCACTATGTGCACTTCGACACCCGCGTGCTGGGCGCGGGGGGCACCGCTGCCCGGCTGGAGAGCCAACACCTCCCCGCCACCACTGCCGGCTGCCTGCGCTTCTGGTACCACATGGACATCCCGGAGCACCTCA
Seq C2 exon
CGGGCGGGGAGCTGCAGGTGAAGCTGCAGAGCGCGGCAGGGCAGCACACGGCGTGGAGCGTGGCAGGGCAGCGGAGCCAAGGCTGGCAAAGCAGCACAGTGCCTTTGGAGAGTCCCAGTGAGTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008995-'33-44,'33-42,37-44
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.260 A=0.043 C2=0.116
Domain overlap (PFAM):
C1:
PF0062918=MAM=PU(28.3=94.0)
A:
PF0062918=MAM=FE(27.1=100)
C2:
PF0062918=MAM=FE(25.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGTGACTTTGAGTGGGACA
R:
CAAAGGCACTGTGCTGCTTTG
Band lengths:
251-386
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]