DreEX6083744 @ danRer10
Exon Skipping
Gene
ENSDARG00000087633 | MAMDC4
Description
MAM domain containing 4 [Source:HGNC Symbol;Acc:HGNC:24083]
Coordinates
chr21:14691129-14693123:-
Coord C1 exon
chr21:14692977-14693123
Coord A exon
chr21:14692728-14692853
Coord C2 exon
chr21:14691129-14691253
Length
126 bp
Sequences
Splice sites
3' ss Seq
AGTAACTTTTATGATTCTAGGAC
3' ss Score
6.24
5' ss Seq
TACGTATGA
5' ss Score
2.15
Exon sequences
Seq C1 exon
ACAGCGTTTGCGATTTTGAGAATGGTTTGTGTAGTTGGTCCAACACTCAAAATCCATCCCTAGACTGGTTAGATTGGGATGTGACCAGTGCGCAAACTGAGATGTTCTACAACACACCACCATACGACCGAACATCAAACACAGAAG
Seq A exon
GACATTTCCTGGTGCTTCCTAATTCGGATCGGGACACTGCTACCCATAATGCTTTGTTGCTGAGCCCGCATCTGTCATCAACCAAAGGAACCTGTCTGAGCTTTTGGGTCTATCAGCCAACCATAC
Seq C2 exon
ATGACACCAAACTCACAGTTTGGAGGCGGTCTGAAGAGACCAAACAAGAGTTGCTAACTCTAAATGAGGGTGATCGAAACTGGAAGTACTTTAGTGTCGATATCACCTCAGAAAGCGAGTACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000087633-'18-21,'18-20,19-21=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.140 A=0.116 C2=0.000
Domain overlap (PFAM):
C1:
PF0062918=MAM=PU(29.1=92.0)
A:
PF0062918=MAM=FE(26.6=100)
C2:
PF0062918=MAM=FE(25.9=100),PF0200911=Rifin_STEVOR=PU(11.6=23.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTTTGTGTAGTTGGTCCAACA
R:
TGGTACTCGCTTTCTGAGGTGA
Band lengths:
249-375
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]