BtaEX6047725 @ bosTau6

Exon Skipping

Gene

ENSBTAG00000038584 | OLFM1

Description

Bos taurus olfactomedin 1 (OLFM1), mRNA. [Source:RefSeq mRNA;Acc:NM_001101879]

Coordinates

chr11:106675880-106691559:-

Coord C1 exon

chr11:106691340-106691559

Coord A exon

chr11:106684034-106684140

Coord C2 exon

chr11:106675880-106676554

Length

107 bp

Sequences

Splice sites

3' ss Seq

CACTGGGCCCTCTCTTCCAGCGT

3' ss Score

8.31

5' ss Seq

AGGGTAAGT

5' ss Score

10.45

Exon sequences

Seq C1 exon

GCGATAAAAGCGAAAATGGATGAACTTAGGCCTTTGATACCTGTGTTGGAGGAGTACAAGGCCGATGCCAAATTGGTATTGCAGTTTAAGGAGGAGGTCCAGAATCTGACGGCAGTGCTTAACGAGCTGCAAGAGGAAATTGGCGCCTATGACTACGATGAACTGCAGAGCAGAGTGTCCAATCTTGAAGAAAGGCTCCGTGCGTGCATGCAAAAACTAG

Seq A exon

CGTGCGGCAAGCTGACCGGCATAAGTGACCCTGTGACCATCAAGACCTCCGGCTCCAGGTTTGGTTCCTGGATGACTGACCCCCTGGCCCCAGAAGGTGATAACAGG

Seq C2 exon

GTCTGGTACATGGATGGCTACCACAACAACCGCTTCGTCCGCGAGTACAAATCCATGCTGGACTTCATGACCACGGACAACTTCACGTCCCACCGCCTCCCACACCCCTGGTCCGGCACAGGGCAGGTGGTGTACAACGGCTCCATCTACTTCAACAAGTTCCAGAGTCACATCGTCATCCGGTTCGACCTGAAGACGGAGACCATCCTCAAGACGCGCAGCCTGGACTACGCCGGCTACAACAACATGTACCACTACGCCTGGGGCGGCCACTCGGACATCGACCTCATGGTGGACGAGAACGGGCTGTGGGCCGTCTACGCCACCAACCAGAACGCCGGCAACATCGTCATCAGCAGGCTGGACCCGGTGTCCCTGCAGGTCCTGCAGACCTGGAACACCAGCTACCCAAAGCGCAGCGCCGGCGAGGCCTTCATCATCTGCGGGACGCTCTACGTCACCAACGGCTACTCGGGCGGCACCAAGGTTCACTACGCCTA

VastDB Features

Vast-tools module Information

Secondary ID

ENSBTAG00000038584-'7-7,'7-6,10-7=AN

Average complexity

A_S

Mappability confidence:

100%=100=100%

Protein Impact

ORF disruption upon sequence exclusion

No structure available

Features

Disorder rate (Iupred):

C1=0.000 A=0.000 C2=0.000

Domain overlap (PFAM):

C1:

PF123083=Noelin-1=PD(0.1=0.0),PF101864=Atg14=FE(41.7=100),PF0154011=Lipoprotein_7=PD(45.9=90.5),PF138741=Nup54=PD(56.9=89.2),PF045087=Pox_A_type_inc=WD(100=28.4)

A:

PF101864=Atg14=PD(12.0=58.3),PF0219111=OLF=PU(12.8=88.9)

C2:

PF0219111=OLF=PD(86.4=96.0)

Main Inclusion Isoform:

ENSBTAP00000053660