HsaEX6063905 @ hg38

Exon Skipping

Gene

ENSG00000130558 | OLFM1

Description

olfactomedin 1 [Source:HGNC Symbol;Acc:HGNC:17187]

Coordinates

chr9:135098286-135121178:+

Coord C1 exon

chr9:135098286-135098505

Coord A exon

chr9:135106749-135106855

Coord C2 exon

chr9:135119504-135121178

Length

107 bp

Sequences

Splice sites

3' ss Seq

ACCTGCGTGCTCTTTTCCAGCTT

3' ss Score

9.52

5' ss Seq

CGGGTGAGT

5' ss Score

9.89

Exon sequences

Seq C1 exon

GCGATAAAAGCGAAAATGGATGAACTTAGGCCTTTGATACCTGTGTTGGAAGAGTACAAGGCCGATGCCAAATTGGTATTGCAGTTTAAAGAGGAGGTCCAGAATCTGACGTCAGTGCTTAACGAGCTGCAAGAGGAAATTGGCGCCTATGACTACGATGAACTTCAGAGCAGAGTGTCCAATCTTGAAGAAAGGCTCCGTGCATGCATGCAAAAACTAG

Seq A exon

CTTGCGGGAAGTTGACGGGCATCAGTGACCCCGTGACTGTCAAGACCTCCGGCTCGAGGTTCGGATCCTGGATGACAGACCCTCTCGCCCCTGAAGGCGATAACCGG

Seq C2 exon

GTGTGGTACATGGACGGCTATCACAACAACCGCTTCGTACGTGAGTACAAGTCCATGGTTGACTTCATGAACACGGACAATTTCACCTCCCACCGTCTCCCCCACCCCTGGTCGGGCACGGGGCAGGTGGTCTACAACGGTTCTATCTACTTCAACAAGTTCCAGAGCCACATCATCATCAGGTTTGACCTGAAGACAGAGACCATCCTCAAGACCCGCAGCCTGGACTATGCCGGTTACAACAACATGTACCACTACGCCTGGGGTGGCCACTCGGACATCGACCTCATGGTGGACGAGAGCGGGCTGTGGGCCGTGTACGCCACCAACCAGAACGCTGGCAACATCGTGGTCAGTAGGCTGGACCCCGTGTCCCTGCAGACCCTGCAGACCTGGAACACGAGCTACCCCAAGCGCAGCGCCGGGGAGGCCTTCATCATCTGCGGCACGCTGTACGTCACCAACGGCTACTCAGGGGGTACCAAGGTCCACTATGCATA

VastDB Features

Vast-tools module Information

Secondary ID

ENSG00000130558_MULTIEX2-4/4=2-C2

Average complexity

S

Mappability confidence:

100%=100=100%

Protein Impact

ORF disruption upon sequence exclusion

No structure available

Features

Disorder rate (Iupred):

C1=0.002 A=0.014 C2=0.001

Domain overlap (PFAM):

C1:

PF123083=Noelin-1=PD(0.1=0.0),PF0154011=Lipoprotein_7=FE(47.7=100),PF131661=AAA_13=FE(49.3=100),PF138741=Nup54=PD(56.9=89.2),PF045137=Baculo_PEP_C=FE(59.8=100),PF045087=Pox_A_type_inc=WD(100=28.4)

A:

PF138741=Nup54=PD(0.1=0.0),PF131661=AAA_13=PD(12.2=47.2),PF045137=Baculo_PEP_C=PD(7.0=25.0),PF061607=EzrA=PD(10.7=36.1),PF0219111=OLF=PU(38.6=88.9)

C2:

PF045137=Baculo_PEP_C=PD(10.6=62.5)

Main Inclusion Isoform:

ENSP00000360858