MmuEX0033068 @ mm10
Exon Skipping
Gene
ENSMUSG00000026833 | Olfm1
Description
olfactomedin 1 [Source:MGI Symbol;Acc:MGI:1860437]
Coordinates
chr2:28214609-28230736:+
Coord C1 exon
chr2:28214609-28214828
Coord A exon
chr2:28222551-28222657
Coord C2 exon
chr2:28229054-28230736
Length
107 bp
Sequences
Splice sites
3' ss Seq
CTGTGTGCACTCTGTTGCAGCCT
3' ss Score
9.39
5' ss Seq
CGGGTAAGT
5' ss Score
10.75
Exon sequences
Seq C1 exon
GCAATAAAAGCGAAAATGGATGAACTTAGGCCTTTGATTCCTGTGTTGGAAGAGTACAAGGCCGATGCCAAATTGGTATTGCAGTTTAAGGAGGAGGTCCAGAATCTGACGTCAGTGCTTAACGAACTGCAAGAGGAGATTGGCGCCTATGACTACGATGAACTTCAGAGCAGAGTGTCCAATCTTGAAGAAAGGCTCCGTGCATGCATGCAAAAACTAG
Seq A exon
CCTGCGGGAAGCTGACAGGCATAAGTGACCCAGTGACTGTCAAGACCTCTGGCTCAAGGTTCGGGTCCTGGATGACAGACCCGCTGGCCCCAGAAGGCGATAACCGG
Seq C2 exon
GTCTGGTACATGGATGGTTATCACAACAACCGCTTCGTCCGTGAGTACAAGTCCATGGTGGACTTCATGAACACGGACAACTTTACCTCTCACCGTCTCCCACACCCCTGGTCAGGTACGGGCCAGGTGGTCTACAATGGCTCCATCTATTTCAACAAATTCCAGAGTCACATTATCATTAGGTTTGACCTGAAGACAGAGACGATTCTGAAGACGCGCAGCCTGGACTATGCTGGCTACAACAATATGTATCACTATGCCTGGGGCGGCCACTCAGACATCGACCTCATGGTGGACGAGAATGGGCTCTGGGCTGTCTATGCCACAAACCAGAACGCAGGCAACATTGTCATCAGCAAGCTGGATCCTGTCTCACTGCAGATCCTCCAGACCTGGAACACCAGCTACCCCAAGCGCAGTGCCGGTGAGGCCTTCATCATCTGCGGCACCCTCTATGTCACCAACGGTTACTCGGGGGGCACCAAGGTCCACTATGCCTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026833_MULTIEX1-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF123083=Noelin-1=PD(0.1=0.0),PF101864=Atg14=FE(41.7=100),PF138741=Nup54=PD(56.8=90.5)
A:
PF101864=Atg14=PD(12.0=58.3),PF0219111=OLF=PU(12.8=88.9)
C2:
PF0219111=OLF=PD(86.4=96.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAGAGTACAAGGCCGATGC
R:
CCGTGTTCATGAAGTCCACCA
Band lengths:
249-356
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types