MmuEX0033068 @ mm9

Exon Skipping

Gene

ENSMUSG00000026833 | Olfm1

Description

olfactomedin 1 [Source:MGI Symbol;Acc:MGI:1860437]

Coordinates

chr2:28070129-28085982:+

Coord C1 exon

chr2:28070129-28070348

Coord A exon

chr2:28078071-28078177

Coord C2 exon

chr2:28084574-28085982

Length

107 bp

Sequences

Splice sites

3' ss Seq

CTGTGTGCACTCTGTTGCAGCCT

3' ss Score

9.39

5' ss Seq

CGGGTAAGT

5' ss Score

10.75

Exon sequences

Seq C1 exon

GCAATAAAAGCGAAAATGGATGAACTTAGGCCTTTGATTCCTGTGTTGGAAGAGTACAAGGCCGATGCCAAATTGGTATTGCAGTTTAAGGAGGAGGTCCAGAATCTGACGTCAGTGCTTAACGAACTGCAAGAGGAGATTGGCGCCTATGACTACGATGAACTTCAGAGCAGAGTGTCCAATCTTGAAGAAAGGCTCCGTGCATGCATGCAAAAACTAG

Seq A exon

CCTGCGGGAAGCTGACAGGCATAAGTGACCCAGTGACTGTCAAGACCTCTGGCTCAAGGTTCGGGTCCTGGATGACAGACCCGCTGGCCCCAGAAGGCGATAACCGG

Seq C2 exon

GTCTGGTACATGGATGGTTATCACAACAACCGCTTCGTCCGTGAGTACAAGTCCATGGTGGACTTCATGAACACGGACAACTTTACCTCTCACCGTCTCCCACACCCCTGGTCAGGTACGGGCCAGGTGGTCTACAATGGCTCCATCTATTTCAACAAATTCCAGAGTCACATTATCATTAGGTTTGACCTGAAGACAGAGACGATTCTGAAGACGCGCAGCCTGGACTATGCTGGCTACAACAATATGTATCACTATGCCTGGGGCGGCCACTCAGACATCGACCTCATGGTGGACGAGAATGGGCTCTGGGCTGTCTATGCCACAAACCAGAACGCAGGCAACATTGTCATCAGCAAGCTGGATCCTGTCTCACTGCAGATCCTCCAGACCTGGAACACCAGCTACCCCAAGCGCAGTGCCGGTGAGGCCTTCATCATCTGCGGCACCCTCTATGTCACCAACGGTTACTCGGGGGGCACCAAGGTCCACTATGCCTA

VastDB Features

Vast-tools module Information

Secondary ID

ENSMUSG00000026833-'5-7,'5-6,6-7

Average complexity

S

Mappability confidence:

100%=100=100%

Protein Impact

ORF disruption upon sequence exclusion

No structure available

Features

Disorder rate (Iupred):

C1=0.000 A=0.000 C2=0.000

Domain overlap (PFAM):

C1:

PF123083=Noelin-1=PD(0.1=0.0),PF101864=Atg14=FE(41.7=100),PF0154011=Lipoprotein_7=PD(45.9=90.5),PF045827=Reo_sigmaC=FE(44.8=100),PF138741=Nup54=PD(56.9=89.2),PF045137=Baculo_PEP_C=PD(50.4=93.2),PF045087=Pox_A_type_inc=WD(100=28.4)

A:

PF101864=Atg14=PD(12.0=58.3),PF045827=Reo_sigmaC=PD(8.6=38.9),PF045137=Baculo_PEP_C=PD(5.4=19.4),PF0219111=OLF=PU(12.8=88.9)

C2:

PF0219111=OLF=PD(86.4=96.0)

Main Inclusion Isoform:

ENSMUSP00000028177