RnoEX0062229 @ rn6

Exon Skipping

Gene

ENSRNOG00000009862 | Olfm1

Description

olfactomedin 1 [Source:RGD Symbol;Acc:620320]

Coordinates

chr3:6782865-6798737:+

Coord C1 exon

chr3:6782865-6783084

Coord A exon

chr3:6790611-6790717

Coord C2 exon

chr3:6797053-6798737

Length

107 bp

Sequences

Splice sites

3' ss Seq

CTATGTGCGCTCTGTTCCAGCCT

3' ss Score

7.55

5' ss Seq

CGGGTAAGT

5' ss Score

10.75

Exon sequences

Seq C1 exon

GCAATAAAAGCGAAAATGGATGAACTTAGGCCTTTGATTCCTGTGTTGGAAGAGTACAAGGCCGATGCCAAATTGGTATTGCAGTTTAAGGAGGAGGTCCAGAATCTGACGTCAGTGCTTAACGAACTGCAAGAGGAAATTGGCGCCTATGACTACGATGAACTTCAGAGCAGAGTGTCCAATCTTGAAGAAAGGCTCCGTGCATGCATGCAAAAACTAG

Seq A exon

CCTGCGGGAAGCTGACAGGCATAAGTGACCCGGTGACTGTCAAGACCTCAGGCTCAAGGTTCGGGTCCTGGATGACAGACCCACTGGCCCCAGAAGGTGATAACCGG

Seq C2 exon

GTCTGGTACATGGATGGTTATCACAACAACCGCTTTGTCCGTGAGTACAAGTCCATGGTGGACTTCATGAACACGGATAATTTTACCTCGCACCGTCTCCCACACCCCTGGTCGGGCACGGGCCAGGTGGTCTACAATGGCTCCATCTATTTCAACAAATTCCAGAGTCACATTATCATTAGGTTTGACCTGAAGACAGAGACGATCCTGAAGACGCGGAGCCTGGACTACGCTGGCTACAACAACATGTACCACTATGCCTGGGGCGGCCACTCAGACATCGACCTCATGGTGGACGAGAACGGGCTCTGGGCCGTCTACGCCACAAACCAGAACGCAGGCAACATTGTCATCAGCAAGCTGGATCCTGTCTCACTGCAAATCCTCCAGACCTGGAACACCAGCTACCCCAAGCGCAGCGCCGGCGAGGCCTTCATCATCTGCGGCACCCTCTACGTCACCAACGGTTACTCGGGGGGCACCAAGGTCCACTATGCCTA

VastDB Features

Vast-tools module Information

Secondary ID

ENSRNOG00000009862-'24-15,'24-13,27-15

Average complexity

S

Mappability confidence:

100%=100=100%

Protein Impact

ORF disruption upon sequence exclusion

No structure available

Features

Disorder rate (Iupred):

C1=0.000 A=0.000 C2=0.000

Domain overlap (PFAM):

C1:

PF123083=Noelin-1=PD(0.1=0.0),PF101864=Atg14=FE(41.7=100),PF0154011=Lipoprotein_7=PD(45.6=90.5),PF138741=Nup54=PD(56.8=90.5),PF045087=Pox_A_type_inc=WD(100=28.4)

A:

PF101864=Atg14=PD(12.0=58.3),PF0219111=OLF=PU(12.8=88.9)

C2:

PF0219111=OLF=PD(86.4=96.0)

Main Inclusion Isoform:

ENSRNOP00000013443