GgaEX0003157 @ galGal3

Exon Skipping

Gene

ENSGALG00000002515 | NOE1_CHICK

Description

NA

Coordinates

chr17:8300564-8308634:+

Coord C1 exon

chr17:8300564-8300783

Coord A exon

chr17:8305477-8305583

Coord C2 exon

chr17:8308350-8308634

Length

107 bp

Sequences

Splice sites

3' ss Seq

AGCCTTGCACTCTCTTTCAGCTT

3' ss Score

8.73

5' ss Seq

AAGGTAAGA

5' ss Score

10.57

Exon sequences

Seq C1 exon

GCAATAAAAGCGAAAATGGAGGAACTTAGGCCTTTGATACCAGTGTTGGAAGAGTACAAAGCCGATGCCAAATTGGTATTGCAGTTTAAAGAGGAGGTCCAGAATCTGACGTCAGTTCTAAACGAACTCCAGGAAGAGATTGGCGCCTATGACTACGAAGAGCTTCAGAACAGAGTGTCAAATCTTGAAGAAAGGCTTCGTGCATGCATGCAAAAATTAG

Seq A exon

CTTGTGGCAAGCTGACGGGAATAAGTGACCCAATCACAATTAAAACCTCGGGGTCCCGCTTCGGCTCGTGGATGACGGACCCTCTCGCCCCAGAGGGAGAGAACAAG

Seq C2 exon

GTCTGGTACATGGACAGCTACCACAACAACCGCTTCGTCCGCGAATACAAATCCATGGCGGATTTCATGAACACCGACAATTTTACCTCTCACCGTCTCCCTCACCCGTGGTCAGGCACCGGTCAAGTGGTCTACAATGGTTCTATCTATTTCAATAAATACCAAAGCCACATAATTATCAGGTTTGACTTGAAAACAGAGACCATTCTCAAGACTCGCAGCCTGGATTATGCCGGCTACAACAACATGTACCACTACGCCTGGGGGGGCCACTCGGACATCGAC

VastDB Features

Vast-tools module Information

Secondary ID

ENSGALG00000002515_MULTIEX1-2/2=1-C2

Average complexity

S

Mappability confidence:

NA

Protein Impact

ORF disruption upon sequence exclusion

No structure available

Features

Disorder rate (Iupred):

C1=0.000 A=0.000 C2=0.000

Domain overlap (PFAM):

C1:

PF123083=Noelin-1=PD(0.1=0.0),PF101864=Atg14=FE(41.7=100),PF0154011=Lipoprotein_7=PD(47.4=97.3),PF041569=IncA=PD(47.1=97.3),PF131661=AAA_13=FE(49.3=100),PF045827=Reo_sigmaC=FE(46.8=100),PF138741=Nup54=PD(56.4=89.2),PF045137=Baculo_PEP_C=FE(64.6=100),PF045087=Pox_A_type_inc=WD(100=28.4)

A:

PF101864=Atg14=PD(12.0=58.3),PF131661=AAA_13=PD(4.1=16.7),PF045827=Reo_sigmaC=PD(4.5=19.4),PF045137=Baculo_PEP_C=PD(0.9=2.8),PF0219111=OLF=PU(12.8=88.9)

C2:

PF0219111=OLF=PD(86.4=96.0)

Main Inclusion Isoform:

ENSGALP00000003955