BtaEX6047765 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000047998 | COL5A1
Description
collagen, type V, alpha 1 [Source:HGNC Symbol;Acc:HGNC:2209]
Coordinates
chr11:106899007-106900210:-
Coord C1 exon
chr11:106900166-106900210
Coord A exon
chr11:106899986-106900039
Coord C2 exon
chr11:106899007-106899051
Length
54 bp
Sequences
Splice sites
3' ss Seq
CCTCTCTTCCGTTTGTCCAGGGC
3' ss Score
8.42
5' ss Seq
AAGGTGCGT
5' ss Score
9.49
Exon sequences
Seq C1 exon
GGCACCCCTGGGAAGCCGGGACCACGGGGGCAGCGAGGCCCGACG
Seq A exon
GGCCCACGAGGTGAAAGAGGCCCACGGGGCATCACCGGCAAGCCTGGCCCCAAG
Seq C2 exon
GGCAACTCTGGAGGCGATGGCCCGGCCGGCCCTCCAGGTGAACGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000047998-'40-46,'40-45,41-46=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(20.0=100)
A:
PF0139113=Collagen=FE(24.3=100),PF0139113=Collagen=PU(6.9=27.8)
C2:
PF0139113=Collagen=PD(17.1=80.0),PF0139113=Collagen=FE(19.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGGAAGCCGGGACCAC
R:
GTTCACCTGGAGGGCCGG
Band lengths:
81-135
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]