GgaEX1016851 @ galGal3
Exon Skipping
Gene
ENSGALG00000002546 | Q90689_CHICK
Description
NA
Coordinates
chr17:8215430-8216823:+
Coord C1 exon
chr17:8215430-8215474
Coord A exon
chr17:8215839-8215892
Coord C2 exon
chr17:8216776-8216823
Length
54 bp
Sequences
Splice sites
3' ss Seq
ATCTTTTGTCTTTTTCCAAGGGT
3' ss Score
7.27
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
Exon sequences
Seq C1 exon
GGGACACCTGGCAAACCAGGTCCAAGGGGGCAACGCGGTCCAACG
Seq A exon
GGTCCACGAGGGGAAAGAGGCCCTAGGGGAAGCACTGGGAAACCTGGCCCAAAG
Seq C2 exon
AAGGGCAACTCTGGTGGTGATGGCCCCCCTGGTCCTCCTGGCGAACGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002546-'41-42,'41-41,42-42=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(15.7=86.7),PF0139113=Collagen=FE(16.5=100)
A:
PF0139113=Collagen=FE(26.6=100),PF0139113=Collagen=FE(19.1=100)
C2:
PF0139113=Collagen=PD(15.3=68.8),PF0139113=Collagen=FE(24.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGACACCTGGCAAACCA
R:
CGTTCGCCAGGAGGACCAG
Band lengths:
92-146
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]