BtaEX6047774 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000047998 | COL5A1
Description
collagen, type V, alpha 1 [Source:HGNC Symbol;Acc:HGNC:2209]
Coordinates
chr11:106886376-106890531:-
Coord C1 exon
chr11:106890424-106890531
Coord A exon
chr11:106887381-106887488
Coord C2 exon
chr11:106886376-106886429
Length
108 bp
Sequences
Splice sites
3' ss Seq
TCATCCCCTCTCCTCTCTAGGGC
3' ss Score
10.76
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
GGATCTCCAGGCGAGAGAGGTCCAGCCGGTGCTGCTGGGCCCATTGGAATTCCAGGGAGACCCGGGCCCCAGGGGCCCCCTGGGCCAGCTGGAGAGAAAGGCGCTCCT
Seq A exon
GGCGAGAAGGGTCCACAAGGCCCAGCTGGCCGAGACGGTCTCCAGGGCCCCGTGGGGCTCCCCGGTCCCGCTGGCCCTGTGGGCCCCCCTGGAGAAGATGGAGACAAG
Seq C2 exon
GGAGAGATTGGGGAGCCAGGACAGAAAGGGAGCAAGGGAGACAAAGGCGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000047998-'50-55,'50-54,51-55=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(23.6=47.2),PF0139113=Collagen=PU(45.8=91.7)
A:
PF0139113=Collagen=FE(48.6=100),PF0139113=Collagen=PU(32.4=66.7)
C2:
PF0139113=Collagen=PD(1.4=5.6),PF0139113=Collagen=FE(23.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCAGGCGAGAGAGGTCC
R:
CTCGCCTTTGTCTCCCTTGC
Band lengths:
155-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]