GgaEX1016838 @ galGal3
Exon Skipping
Gene
ENSGALG00000002546 | Q90689_CHICK
Description
NA
Coordinates
chr17:8223795-8225936:+
Coord C1 exon
chr17:8223795-8223902
Coord A exon
chr17:8225188-8225295
Coord C2 exon
chr17:8225883-8225936
Length
108 bp
Sequences
Splice sites
3' ss Seq
CCTACTCCTTCTGCTTCCAGGGC
3' ss Score
10.25
5' ss Seq
AAGGTGGGA
5' ss Score
6.03
Exon sequences
Seq C1 exon
GGCTCTCCTGGTGAGCGAGGTCCTGCGGGCTCAGCTGGCCCCATTGGCTTACCAGGGCGACCTGGCCCACAGGGACCTCCGGGACCTGCAGGTGAAAAGGGAGCCCCG
Seq A exon
GGCGAGAAGGGTCCTCAAGGACCAGCAGGTCGGGATGGCATCCAAGGCCCCGTGGGACTCCCGGGTCCAGCAGGTCCTGTTGGCCCCCCCGGCGAGGATGGAGACAAG
Seq C2 exon
GGCGAGATCGGGGAGCCTGGCCAGAAGGGCAGCAAGGGTGACAAAGGGGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002546-'50-52,'50-51,51-52=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(21.4=41.7),PF0139113=Collagen=PU(47.3=97.2)
A:
PF0139113=Collagen=FE(45.5=100),PF0139113=Collagen=PU(30.2=72.2)
C2:
PF0139113=Collagen=PD(1.3=5.6),PF0139113=Collagen=FE(19.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTCTCCTGGTGAGCGA
R:
CTGCTCCCCTTTGTCACCCTT
Band lengths:
162-270
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]