BtaEX6050102 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000031917 | SCAF8
Description
SR-related CTD-associated factor 8 [Source:HGNC Symbol;Acc:HGNC:20959]
Coordinates
chr9:92844766-92847813:+
Coord C1 exon
chr9:92844766-92844942
Coord A exon
chr9:92846553-92846632
Coord C2 exon
chr9:92847696-92847813
Length
80 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTTTCCCCACTTAGAAG
3' ss Score
7.92
5' ss Seq
ACTGTAAGC
5' ss Score
4.95
Exon sequences
Seq C1 exon
CTTCAGCAGTTAATACAGACTTTACAGATACAGCAGCAGAAGCCTCAGCCCTCCATCCTGCAAGCCCTGGATGCTGGTCTTGTCGTCCAGCTGCAGGCTCTTACAGCACAGCTTACAGCAGCAGCTGCAGCAGCCAACACCCTTAATCCCCTAGAACAGGGGGTGTCTTTTAACAAG
Seq A exon
AAGTTGATGGATAGGTTTGATTTTGGAGAAGATTCTGAGCATAGTGAAGAACCCAAAAAGGAAATTCCAGCTTCTCAACT
Seq C2 exon
TTCTCATGTTTCGGAATCTGTGAACAATTCCATCTTTCATCAGATAGCAGAACAATTGCAGCAGCAAAACCTTGAACATCTCAGACAGCAACTCCTGGAACAGCAGCAGCCTCAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000031917-'11-11,'11-8,12-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.220 A=0.963 C2=0.600
Domain overlap (PFAM):
C1:
PF100254=DUF2267=PU(2.1=5.1)
A:
PF100254=DUF2267=FE(18.6=100)
C2:
PF100254=DUF2267=FE(27.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCAGCCAACACCCTTAATCC
R:
CTTTTGAGGCTGCTGCTGTTC
Band lengths:
167-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]