DreEX6056186 @ danRer10
Exon Skipping
Gene
ENSDARG00000100056 | scaf8
Description
SR-related CTD-associated factor 8 [Source:ZFIN;Acc:ZDB-GENE-030131-3703]
Coordinates
chr17:48849497-48851388:+
Coord C1 exon
chr17:48849497-48849673
Coord A exon
chr17:48851102-48851181
Coord C2 exon
chr17:48851268-48851388
Length
80 bp
Sequences
Splice sites
3' ss Seq
GTCATTTGCTTGTGTTGCAGAAG
3' ss Score
7.82
5' ss Seq
GATGTATGC
5' ss Score
3.89
Exon sequences
Seq C1 exon
TTGCAGCAGCTGGTTCAGAGCCTGCAGATGCAGCAGCAGAAGCCTCAGCCCTCTCTGCTGCAGGCGCTGGATGCTGGTTTGGTGGTGCAGCTTCAGGCTTTGACTGCACAACTCACTGCAGCTGCAACAGCCAACAAACTCAACCCACTGGAACAGAGAGTTTCCTCCTTCAACAAG
Seq A exon
AAGCTGCTGGGTCAGTTTGATTTCGGGAATGAGTCTGAACACAGCGAGGATTCGAAGAAAGATTCTGCGTCCTCTCAGAT
Seq C2 exon
ACCTGTGCTGTCAGATTCCATCAACAGCTCAATATTTCATCAGCTGGCGGAGCATCTTCAGCAGCAAAACCTCGAGCAGTTTCAGAAACAGCTAATGGAGCACCAACAGCATCAACAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000100056-'4-8,'4-6,5-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.254 A=0.815 C2=0.732
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGCCAACAAACTCAACCCA
R:
GTTGATGCTGTTGGTGCTCCA
Band lengths:
167-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]