RnoEX0078261 @ rn6
Exon Skipping
Gene
ENSRNOG00000016919 | Scaf8
Description
SR-related CTD-associated factor 8 [Source:RGD Symbol;Acc:708362]
Coordinates
chr1:44065708-44069073:+
Coord C1 exon
chr1:44065708-44065884
Coord A exon
chr1:44067235-44067314
Coord C2 exon
chr1:44068956-44069073
Length
80 bp
Sequences
Splice sites
3' ss Seq
TGTCTTTCTCCCCTTCTTAGAAG
3' ss Score
9.47
5' ss Seq
ACTGTAAGA
5' ss Score
4.8
Exon sequences
Seq C1 exon
CTTCAGCAACTAATACAGACCTTACAGATACAACAGCAGAAGCCCCAGCCCTCTATCCTTCAGGCTTTGGATGCTGGCCTTGTGGTTCAGTTGCAGGCACTCACTGCACAGCTTACAGCTGCAGCTGCTGCAGCCAACACACTTACTCCCTTGGACCAGGGAGTCTCTTTCACCAGG
Seq A exon
AAGTTGATGGATAGATTTGATTTTGGGGAAGATTCTGAGCATAGTGAAGAATCCAAAAAGGAAATTCCTACTCCTCAACT
Seq C2 exon
CTCTCACGTTTCTGAGTCTGTGAACAACTCCATCTTCCATCAGATAGCAGAACAGCTGCAGCAGCAGAACCTGGAGCAGTTGCGGCAGCAGCTCCTGGAGCAGCAGCAGCCTCAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016919-'17-15,'17-14,18-15
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.176 A=0.949 C2=0.625
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCAGTTGCAGGCACTCACTG
R:
CAACTGCTCCAGGTTCTGCTG
Band lengths:
174-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]