GgaEX1050989 @ galGal3
Exon Skipping
Gene
ENSGALG00000013635 | SCAF8
Description
NA
Coordinates
chr3:52236443-52242726:+
Coord C1 exon
chr3:52236443-52236619
Coord A exon
chr3:52242133-52242212
Coord C2 exon
chr3:52242609-52242726
Length
80 bp
Sequences
Splice sites
3' ss Seq
CTTACTTTGTTTTCTCCTAGAAG
3' ss Score
8.34
5' ss Seq
ACTGTAAGA
5' ss Score
4.8
Exon sequences
Seq C1 exon
CTTCAGCAGTTGATACAAACGCTGCAGATACAGCAGCAGAAACCTCAGCCTTCACTACTTCAAGCCCTGGATGCTGGTCTTGTCGTTCAGTTACAGGCCCTAACTGCACAACTTACAGCTGCAGCTGCTGCTGCCAATACACTTAATCCGTTGGAACAGAGTGTCTCTTTTAATAAG
Seq A exon
AAGCTGATGGACAGGTTTGACTTTGGGGAAGAATCTGAACAAAATGAAGAGCCTAAAAAGGAAACTCCCACTTCCCAACT
Seq C2 exon
GCCTTTAGTACCAGAATCTGTGAACAACTCACTTTTTCACCAACTAGCTGAACAACTGCAGCAACAAAATTTAGAACATCTCAGACAACAACTTCTGGAGCAACAGCAGCCTCAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013635-'9-14,'9-12,10-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.288 A=0.963 C2=0.850
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGATGCTGGTCTTGTCGTT
R:
TGTTGCTGCAGTTGTTCAGCT
Band lengths:
177-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]