BtaEX6050869 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000007371 | SCAMP1
Description
Bos taurus secretory carrier membrane protein 1 (SCAMP1), mRNA. [Source:RefSeq mRNA;Acc:NM_001076054]
Coordinates
chr10:9446276-9454293:+
Coord C1 exon
chr10:9446276-9446384
Coord A exon
chr10:9449255-9449383
Coord C2 exon
chr10:9454134-9454293
Length
129 bp
Sequences
Splice sites
3' ss Seq
CCTTTGTTTTTAATTTGCAGGCA
3' ss Score
10.69
5' ss Seq
TGTGTGAGT
5' ss Score
5.84
Exon sequences
Seq C1 exon
GAACATGCCTTGGCCCAAGCTGAACTTCTTAAGCGCCAGGAAGAACTAGAAAGAAAAGCAGCGGAGTTAGACCGTCGAGAACGAGAAATGCAGAACCTCAGTCAACATG
Seq A exon
GCAGAAAAAACAATTGGCCACCTCTTCCTGACAACTTTCCTGTGGGCCCTTGTTTTTATCAGGATTTTTCTGTAGATATCCCTGTAGAATTCCAAAAAACAGTAAAGATTATGTACTACTTATGGATGT
Seq C2 exon
TCCATGCTGTAACACTATTTCTAAATATCTTCGGATGCTTGGCTTGGTTTTGTGTTGATCCTCCAAGAGGGGTTGATTTTGGATTGAGTATCCTGTGGTTCTTACTTTTTACTCCTTGTTCATTTGTCTGTTGGTACAGACCACTTTACGGAGCTTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000007371-'18-9,'18-6,20-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.649 A=0.045 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF041448=SCAMP=PU(23.6=95.5)
C2:
PF041448=SCAMP=FE(29.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CTTGGCCCAAGCTGAACTTCT
R:
GCTCCGTAAAGTGGTCTGTACC
Band lengths:
255-384
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]