GgaEX1051003 @ galGal4
Exon Skipping
Gene
ENSGALG00000004425 | SCAMP1
Description
secretory carrier-associated membrane protein 1 [Source:RefSeq peptide;Acc:NP_001264922]
Coordinates
chrZ:22589469-22596798:-
Coord C1 exon
chrZ:22596687-22596798
Coord A exon
chrZ:22593465-22593593
Coord C2 exon
chrZ:22589469-22589628
Length
129 bp
Sequences
Splice sites
3' ss Seq
TTTTTTATTATTATTTGCAGGTA
3' ss Score
9.49
5' ss Seq
TGTGTAAGT
5' ss Score
7.65
Exon sequences
Seq C1 exon
GAGCATGCCTTGGCCCAGGCAGAACTACTAAAGCGTCAAGAAGAATTGGAAAGAAAAGCTGCTGAACTGGATCGCAGAGAAAGGGAAATGCAGAGTCTGAATCAGCAGGGGG
Seq A exon
GTAGAAAAAATAACTGGCCACCTCTTCCTGAGAATTTTCCAGTGGGTCCATGTTTCTACCAGGACTTTTCTGTAGACATTCCTGTAGAATTCCAGAAGACTGTAAAGATTATGTACTACTTGTGGATGT
Seq C2 exon
TCCATACAGTGACACTGTTTCTTAATATCTTTGGATGTTTGGCCTGGTTTTATGTTGATGCTACACGAGGTGTTGATTTTGGATTGAGTATCCTCTGGTTCTTGCTTTTTACACCTTGTTCTTTTGTCTGCTGGTACAGACCACTTTATGGAGCCTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004425-'14-13,'14-12,15-13
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.605 A=0.091 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF041448=SCAMP=PU(23.6=95.5)
C2:
PF041448=SCAMP=FE(29.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCCCAGGCAGAACTACTAA
R:
TCTGTACCAGCAGACAAAAGAACA
Band lengths:
242-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]