RnoEX0078286 @ rn6
Exon Skipping
Gene
ENSRNOG00000061582 | Scamp1
Description
secretory carrier membrane protein 1 [Source:RGD Symbol;Acc:3625]
Coordinates
chr2:23877129-23884154:-
Coord C1 exon
chr2:23884046-23884154
Coord A exon
chr2:23881261-23881389
Coord C2 exon
chr2:23877129-23877288
Length
129 bp
Sequences
Splice sites
3' ss Seq
AACTTTTTTTTCACTTACAGGGA
3' ss Score
10.56
5' ss Seq
TGTGTGAGT
5' ss Score
5.84
Exon sequences
Seq C1 exon
GAGCATGCCTTGGCTCAAGCCGAGCTTCTCAAGCGCCAAGAGGAGCTGGAGAGAAAAGCTGCAGAGTTAGATCGTCGAGAGCGAGAGATGCAGAACCTGAGTCAGCACG
Seq A exon
GGAGAAAAAATAATTGGCCACCTCTTCCTAGCAATTTCCCTGTGGGGCCTTGTTTCTATCAAGACTTTTCTGTAGACATTCCCGTAGAGTTCCAGAAGACAGTGAAGCTTATGTACTACCTATGGATGT
Seq C2 exon
TCCATGCGGTAACCCTGTTCCTGAACATCTTCGGATGCCTGGCTTGGTTTTGTGTTGATTCCTCAAGAGCAGTTGACTTTGGACTCAGCATCCTGTGGTTCTTGCTCTTTACCCCCTGTTCATTTGTCTGTTGGTACAGGCCACTCTATGGGGCCTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000061582-'15-13,'15-12,17-13
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.601 A=0.045 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF041448=SCAMP=PU(23.6=95.5)
C2:
PF041448=SCAMP=FE(55.2=100),PF041448=SCAMP=PU(3.9=3.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CTCAAGCCGAGCTTCTCAAGC
R:
CCATAGAGTGGCCTGTACCAAC
Band lengths:
247-376
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]