MmuEX0041132 @ mm9
Exon Skipping
Gene
ENSMUSG00000021687 | Scamp1
Description
secretory carrier membrane protein 1 [Source:MGI Symbol;Acc:MGI:1349480]
Coordinates
chr13:94980532-95023025:-
Coord C1 exon
chr13:95022948-95023025
Coord A exon
chr13:94999669-94999797
Coord C2 exon
chr13:94980532-94980633
Length
129 bp
Sequences
Splice sites
3' ss Seq
CTTTTTTTTTTCACTTACAGGGA
3' ss Score
12.21
5' ss Seq
TGTGTGAGT
5' ss Score
5.84
Exon sequences
Seq C1 exon
GACCCATCTGTCACACAGGTGACAAGAAATGTGCCACCGGGACTTGATGAATACAACCCTTTCTCCGACTCTCGCACG
Seq A exon
GGAGAAAAAATAATTGGCCTCCTCTTCCTAGCAATTTTCCCGTGGGACCTTGTTTCTATCAAGACTTTTCTGTTGACATTCCTGTAGAATTCCAGAAGACGGTGAAGCTTATGTACTACCTATGGATGT
Seq C2 exon
GAGCGACAGTTCCTTCAGGTTCTTTGTGTTCTTCTTCGTCTATATTTGTCAGTTTGCTGTCCATGTGCTCCAGGCTGCAGGATTTCATAACTGGGGAAACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021687_MULTIEX1-3/4=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.073 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF049918=LicD=PD(39.0=88.6),PF041448=SCAMP=PU(79.2=95.5)
C2:
PF041448=SCAMP=FE(19.1=100),PF076666=MpPF26=PU(35.6=88.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GACCCATCTGTCACACAGGT
R:
GTTTCCCCAGTTATGAAATCCTGC
Band lengths:
178-307
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: