DreEX6082801 @ danRer10
Exon Skipping
Gene
ENSDARG00000036911 | scamp1
Description
secretory carrier membrane protein 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1803]
Coordinates
chr21:3568314-3578384:-
Coord C1 exon
chr21:3578273-3578384
Coord A exon
chr21:3574381-3574509
Coord C2 exon
chr21:3568314-3568473
Length
129 bp
Sequences
Splice sites
3' ss Seq
TTTTTTGTCTTGTTTCTAAGGGA
3' ss Score
9.35
5' ss Seq
TGTGTGAGT
5' ss Score
5.84
Exon sequences
Seq C1 exon
GATCAATCGCGAGCTCAAGCGGAGTTATTGAGGAGACAGGAGGAGCTGGAGAGAAAAGCCGCTGAGCTGGACCGCAGGGAGAGAGAGATGCAGTCGCTCAACGCGTCAGGAG
Seq A exon
GGAGGAAAAACAACTGGCCGCCTCTTCCAGAGAAGTTTCCAGTGGGTCCTTGTTTCTATCATGACATATCGGTGGATATACCTGTGGAGTACCAGAAAACCGTCAAGATCATGTACTATCTCTGGATGT
Seq C2 exon
TCCACACGGGGACGCTGTTTGCTAATATCTTCGGCTGTCTGTCGTGGTTCTGTGTGGATGCGTCGAGGGGAGTGGATTTTGGTCTAGCTATGCTCTGGTTTATGCTCTTCACACCCTGCTCTTTTGTCTGCTGGTACAGACCTCTGTATGGAGCGTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000036911-'6-6,'6-5,7-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.091 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF041448=SCAMP=PU(23.6=95.5)
C2:
PF041448=SCAMP=FE(29.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TTGAGGAGACAGGAGGAGCTG
R:
TGAACGCTCCATACAGAGGTCT
Band lengths:
244-373
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]