BtaEX6051099 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000034140 | MEGF11
Description
multiple EGF-like-domains 11 [Source:HGNC Symbol;Acc:HGNC:29635]
Coordinates
chr10:12799164-12807326:-
Coord C1 exon
chr10:12807076-12807326
Coord A exon
chr10:12805773-12805893
Coord C2 exon
chr10:12799164-12799300
Length
121 bp
Sequences
Splice sites
3' ss Seq
ACCTCTGCTTCTCTATGCAGCTG
3' ss Score
11.33
5' ss Seq
ACGGTAGGT
5' ss Score
10.15
Exon sequences
Seq C1 exon
ACAGGCTGTGATAGCGACCACTGGGGCCCCCATTGCAGCAACCGGTGCCAGTGCCAGAATGGGGCCCTGTGCAACCCCATCACAGGCGCCTGCGTGTGTGCTGCTGGCTTCCGAGGCTGGCGCTGTGAGGAGCTCTGCGCGCCAGGCACCCATGGCAAGGGCTGCCAGCTGCTGTGCCAGTGCCGCCACGGCGCCAGCTGCGACCCCCAAACGGGCGAGTGCCTCTGCGCACCCGGCTACACCGGTGTCTA
Seq A exon
CTGCGAGGAGCTTTGCCCGCCTGGGAGCCATGGGGCTCACTGTGAGCTGCGCTGCCCCTGCCAGAACGGGGGTACCTGCCACCACATCACTGGCGAGTGTGCCTGCCCTCCAGGCTGGACG
Seq C2 exon
GGAGCAGTGTGTGCCCAGCCCTGCCCACCGGGGACGTTCGGCCAGAACTGCAGCCAGGACTGTCCTTGCCACCATGGAGGGCAGTGTGACCACGTGACTGGGCAGTGCCACTGCACAGCTGGCTACATGGGAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000034140-'2-3,'2-2,3-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=WD(100=54.8),PF0005319=Laminin_EGF=PU(54.3=29.8)
A:
PF0005319=Laminin_EGF=PD(43.5=48.8),PF126612=hEGF=PU(61.5=19.5)
C2:
PF126612=hEGF=PD(23.1=6.5),PF0005319=Laminin_EGF=PU(54.3=54.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTGCAACCCCATCACAGG
R:
CAGTCCTGGCTGCAGTTCTG
Band lengths:
247-368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]