GgaEX6008284 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr10:20409402-20415558:-
Coord C1 exon
chr10:20415302-20415558
Coord A exon
chr10:20413957-20414077
Coord C2 exon
chr10:20409402-20409538
Length
121 bp
Sequences
Splice sites
3' ss Seq
TTTCTTCTCTCTCCACAAAGCTG
3' ss Score
8.24
5' ss Seq
ACGGTATGG
5' ss Score
8.47
Exon sequences
Seq C1 exon
TGTTTTACAGGTTGCGATAGCGATCACTGGGGACCGCACTGCAGCAACCGGTGCCAGTGCCAGAACGAAGCCCTCTGCAACCCCATCACGGGCGCCTGTGTCTGCGCAGACGGGTACCAAGGCTGGCGCTGCGAGGAGCTCTGTGAGCCCGGGAGCTACGGCAAGGGCTGCCAGTTCCAGTGCCAGTGTCACAACGGGGCGACCTGCGACCACGAGACGGGAGAATGTCACTGCGCTCCTGGATACACGGGGGTGTT
Seq A exon
CTGTGAAGAGCGCTGTCCCTCCGGGAGCCACGGAGCTCAGTGTGAGCTGCGCTGCCCGTGCCAGAATGGAGGGGTCTGCCACCACATCACTGGGGAGTGCTCCTGCCCTGCTGGATGGACG
Seq C2 exon
GGGTTGGTGTGTGCACAGCCATGTCCTCCTGGGACATTCGGAATTAATTGCAGCCAGGTCTGTCCATGCCACAACGGAGGACACTGTGATCCCGTGACAGGAAAATGCATCTGTACACCTGGCTATGTTGGAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007631-'0-1,'0-0,1-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=WD(100=59.3),PF126612=hEGF=PU(84.6=12.8)
A:
PF126612=hEGF=PD(7.7=2.4),PF126612=hEGF=PU(61.5=19.5)
C2:
PF126612=hEGF=PD(23.1=6.5),PF0005319=Laminin_EGF=PU(54.3=54.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGAACGAAGCCCTCTGCAAC
R:
AATTCCGAATGTCCCAGGAGGA
Band lengths:
242-363
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]