BtaEX6053095 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021945 | NID2
Description
Bos taurus nidogen 2 (osteonidogen) (NID2), mRNA. [Source:RefSeq mRNA;Acc:NM_001102065]
Coordinates
chr10:44902424-44915214:-
Coord C1 exon
chr10:44915071-44915214
Coord A exon
chr10:44905717-44905836
Coord C2 exon
chr10:44902424-44902645
Length
120 bp
Sequences
Splice sites
3' ss Seq
TCTGTACCTGACTGCTGCAGATG
3' ss Score
6.93
5' ss Seq
CTGGTAAGG
5' ss Score
9.68
Exon sequences
Seq C1 exon
TGATCACCCCACCTCCCAACCCCTGTGAGGATGGCCATCATAACTGTGCTCCCGCCAGCCAGGCCCGGTGCATTCACCATGGAGACGGCTCCTTCAGCTGCGCCTGCCTGCCTGGTTATGCCGGAGACGGGCACCGGTGCACCG
Seq A exon
ATGTTGACGAATGCTCGGAAAACAGATGTCACCCCTCGGCCACCTGCTCCAATACCCCTGGCTCCTTCTCCTGCCGCTGCCAACCTGGATATTACGGGGATGGATTTCAGTGCACACCTG
Seq C2 exon
AGCCCACCCAGAGGCCCCGGACCGTCTGTGAGCGCTGGAGGGAAAGCCTGCTGGAGCACTACGGGGGCACCCCCAGGGACGACCAGTATGTGCCTCAGTGCGACGACCTGGGCCACTTCACCCCGCTGCAGTGCCATGGCAAGAGTGACTTCTGCTGGTGTGTCGACCAGGACGGCAGAGAGGTGCAGGGCACCCGCTCGCAGCCAGGCATCACCCCTGCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021945-'26-17,'26-16,27-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.024 C2=0.227
Domain overlap (PFAM):
C1:
PF126622=cEGF=PU(81.8=36.7)
A:
PF126622=cEGF=PD(13.6=7.3),PF129472=EGF_3=WD(100=82.9)
C2:
PF0008613=Thyroglobulin_1=WD(100=88.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCATTCACCATGGAGACGG
R:
GTCGACACACCAGCAGAAGTC
Band lengths:
244-364
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]