DreEX0050615 @ danRer10
Exon Skipping
Gene
ENSDARG00000075707 | nid2a
Description
nidogen 2a (osteonidogen) [Source:ZFIN;Acc:ZDB-GENE-030827-2]
Coordinates
chr17:14812760-14818439:-
Coord C1 exon
chr17:14818311-14818439
Coord A exon
chr17:14815803-14815928
Coord C2 exon
chr17:14812760-14812987
Length
126 bp
Sequences
Splice sites
3' ss Seq
GTTGTGTGTGGTGTTTGCAGATG
3' ss Score
8.65
5' ss Seq
ATGGTAGCT
5' ss Score
2.12
Exon sequences
Seq C1 exon
ATGTTGATGAGTGTGCAGAAGGTCTGAGCTCTTGTGGTGCTCACTCTCACTGTGTGAATCTGCCTGGAAGCCATCGCTGTCAGTGTGAGAGCGGATTCCAGTTTGGATTTGATGGACGCACATGTCAGG
Seq A exon
ATGTGGACGAGTGTGGTGAGCAGCCGTGTCACGCCCAGGCCTTGTGCTCAAACAGTCCGGGATCTTTCCGGTGCCAGTGCCAACCGGGATACCATGGAGATGGTTTCCAGTGCCACCCTCAAAATG
Seq C2 exon
GTCATCCCAAGACCCGCTGTGAGCAGCACAGAGACAGTCTTCAGAGTGGAGATGGTGGCGTTCCTGCCGTCGGAGCTTTCATCCCTCAGTGTGATGAGGAGGGTCAGTACAGGCCGCTGCAGTGCCACGGCTCCACTGGACACTGCTGGTGTGTGGACAATAGAGGGCAGGAGAGAGCAGGAACCAGAACTCCACCCGGATCACCACCTAGAAACTGCGATGAACCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000075707_MULTIEX2-3/3=2-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.023 C2=0.394
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=95.5)
A:
PF129472=EGF_3=WD(100=79.1)
C2:
PF0008613=Thyroglobulin_1=WD(100=89.6)
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCATCGCTGTCAGTGTGAGAG
R:
TCTGGTTCCTGCTCTCTCCTG
Band lengths:
247-373
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]