MmuEX6039744 @ mm10
Exon Skipping
Gene
ENSMUSG00000021806 | Nid2
Description
nidogen 2 [Source:MGI Symbol;Acc:MGI:1298229]
Coordinates
chr14:19791508-19798645:+
Coord C1 exon
chr14:19791508-19791651
Coord A exon
chr14:19797164-19797283
Coord C2 exon
chr14:19798397-19798645
Length
120 bp
Sequences
Splice sites
3' ss Seq
CCTGTCCCTGACCTCTGCAGATG
3' ss Score
10.64
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
Exon sequences
Seq C1 exon
TGATCGCCCCACCTCCCAACCCTTGCCTCGATGGCAGTCACACCTGTGCCCCTGAGGGGCAAGCCAGGTGCATTCACCATGGAGGCAGCTCATTCAGTTGTGCCTGCCTGCCAGGCTTCATTGGCACTGGGCATCAGTGTTCTG
Seq A exon
ATGTTGATGAATGTGCGGAAAACCGATGTCATGAGGCAGCTATCTGCTACAATACCCCCGGGTCCTTCTCCTGCCGTTGCCAGCCTGGGTATCGAGGGGACGGGTTTCACTGCACCTCTG
Seq C2 exon
ACACGGTTCCGGAAGATTCCATCTCAGGACTGAAGCCCTGTGAATACCAGCAGCGCTATGCTCAGACACAGCACGCCTACCCTGGGTCACGGATCCACATCCCCCAGTGTGATGACCAGGGAAACTTCGTGCCACTGCAGTGCCACGGCAGCACTGGCTTCTGCTGGTGTGTGGACCGAAATGGCCACGAAGTCCCTGGCACGCAGACTCCACCCGGCTCCACCCCGCCCCACTGTGGACCACCTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021806-'18-17,'18-16,19-17
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.226
Domain overlap (PFAM):
C1:
PF129472=EGF_3=WD(100=79.6),PF0764510=EGF_CA=PU(0.1=0.0)
A:
PF0764510=EGF_CA=WD(100=92.7)
C2:
PF0008613=Thyroglobulin_1=WD(100=78.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCATGGAGGCAGCTCATTCAG
R:
CCATTTCGGTCCACACACCAG
Band lengths:
252-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types