GgaEX6039563 @ galGal3
Exon Skipping
Gene
ENSGALG00000012394 | NID2
Description
NA
Coordinates
chr5:60685579-60687307:-
Coord C1 exon
chr5:60687164-60687307
Coord A exon
chr5:60686968-60687087
Coord C2 exon
chr5:60685579-60685833
Length
120 bp
Sequences
Splice sites
3' ss Seq
CCGTGTCCTGCCTTGCGTAGATG
3' ss Score
8.93
5' ss Seq
ATGGTAAGG
5' ss Score
9.33
Exon sequences
Seq C1 exon
TGCCGACCCCTGCGGCTGACCCCTGTGAGGTTGGGAGGCACCCATGCGCTCCGAGGGACCGGGCGCGCTGCCTGCCCCGTGCCGGGGGTCAGCCTGCCTGCGAGTGCCTGCCCGGGTACGCCGGCGACGGCCGCGTCTGCTCCG
Seq A exon
ATGTGAATGAGTGCACCCTAAACCTGTGTCACCCTGCTGCCATCTGCTACAACACGCCGGGCTCATTCTCCTGCCAGTGCCAGCCCGGTTACGAAGGCGATGGCTTCCAGTGCACGCATG
Seq C2 exon
GTGTTTCTCTGCCAGCAGGTTCCTCCCAGCAGCTGACGCCATGTGAGCACGAGCGGCTGTACCCACGGGCAGTGCCACCGGGCCCCTCACCCGTGGGCAACGGACACGTGCCACAGTGTGACGAGCAGGGCAACTATCGGCCCCTGCAGTGCCACGGCAGCACCGGGTATTGCTGGTGCGTGGACGGTGCGGGGCAGGAGATTGCCGGCACCAGGACAGCGCCGGGCAGCACGCCGCTGCGCTGCGGGAACCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012394-'10-13,'10-11,11-13=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.407
Domain overlap (PFAM):
C1:
PF126622=cEGF=PU(80.0=32.7)
A:
PF126622=cEGF=PD(15.0=7.3),PF129472=EGF_3=WD(100=82.9)
C2:
PF0008613=Thyroglobulin_1=WD(100=72.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACCCCTGTGAGGTTGGGAG
R:
GTCACACTGTGGCACGTGTC
Band lengths:
249-369
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]